Pablo Riesgo-Ferreiro
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priesgo.bsky.social
Pablo Riesgo-Ferreiro
@priesgo.bsky.social
Bioinformatics Scientist @ BioNTech
#bioinformatics #AI #immunology #cancer #vaccines
Opinions my own
Maybe keep an eye on the genome in a bottle initiative www.nist.gov/programs-pro...

The RNA part is less mature than others but still you'll find there some public human samples which you can analyse and contrast results.
Genome in a Bottle
Consortium goals:The Genome in a Bottle Consortium is a public-private-academic consortium hosted by NIST to develop the technical infrastructure (reference standards, reference methods, and reference...
www.nist.gov
December 18, 2024 at 12:49 AM
Interesting! From what I find it was in a book by Juan de Mena, las Trezientas in 1566 and later on by Manuel Martin in 1788.

Or that says here:
www.abc.es/ciencia/abci...
«Científico», una palabra inventada por españoles que en primer lugar se usó para hablar de una mujer
La palabra apareció en un libro de Juan de Mena en el siglo XVI y fue popularizada por William Whewell en el XIX. La primera persona descrita por ella fue Mary Somerville
www.google.com
December 14, 2024 at 8:01 PM
Reposted by Pablo Riesgo-Ferreiro
In our work (EmbedGEM: doi.org/10.1093/bioa...) we developed the first formal evaluation framework for multivariate phenotypes that reports metrics for both heritability as well as disease relevance. The way we evaluate heritability is using several simple proxies: number of associations, (6/)
EmbedGEM: a framework to evaluate the utility of embeddings for genetic discovery
AbstractSummary. Machine learning-derived embeddings are a compressed representation of high content data modalities. Embeddings can capture detailed infor
academic.oup.com
December 5, 2024 at 6:27 AM
The altmetric works for bluesky!
December 6, 2024 at 1:48 PM
The one thing that I still do not find satisfactory in VScode which pycharm excels at is code refactoring. There are so many patterns in pycharm... I hope they implement something close soon in VScode
December 4, 2024 at 10:36 PM
Hi @benblaiszik.bsky.social would you, please, add me here? AI for immunology and Bioinformatics in general
December 4, 2024 at 10:23 PM
Thanks @kevinkaichuang.bsky.social would you add me there too?
December 4, 2024 at 10:17 PM
Why don't you just use an ssh remote? The code will be stored remotely but editing is "local". 2, 3 and 4 are met.
This is precisely something that pycharm does but only with the pro version not with the free version.
December 4, 2024 at 10:12 PM