Pooja Gupta
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poojag96.bsky.social
Pooja Gupta
@poojag96.bsky.social
Postdoc @STRUBI (Oxford) - drug discovery against influenza
PhD @YSBL (York) - the bioenergetics of bacterial spore germination
I do microbiology, biochemistry, structural biology, biophysics whilst listening to a lot of radio/cricket
Really enjoyed the book and the Rethink episode on big tech stealing our lives, I'm sorry this has happened. Goes on to show that for all the chat about AI replacing human creativity, the truth is that AI will degenerate without a constant supply of human creative output!
March 20, 2025 at 2:52 PM
Awh thanks Jamie! 😁
March 18, 2025 at 5:47 PM
4 years of serious sleuthing with @jnb-lab.bsky.social and our great collaborators who are not yet on Bluesky have led to a story that kept us guessing throughout - we hope you enjoy reading the paper! :) End/
March 18, 2025 at 1:55 PM
...reductive pressure that builds because the aa3 oxidases are slowed down by a high membrane potential. Yth is able to reduce O2 regardless. Its deletion slowing rehydration is the first genetic evidence linking germination and bioenergetics since the 60s-70s when these investigations began 8/
March 18, 2025 at 1:55 PM
...replacing the canonical enzymes YumB instead of NDH-2, and YthAB instead of CydAB, a bd oxidase. A bd oxidase in an aerobic species cultivated with plenty of oxygen was rather surprising given their reputation as O2-scavenging enzymes. Yth in germinating spores serves as a relief valve for... 7/
March 18, 2025 at 1:55 PM
...a recasting of germination as rehydration *and re-energisation* of a dormant spore. I'll end with a short note on the spore respiratory chain. It has to operate in a membrane with reduced fluidity and at a physiological extreme/edge of life. It has 2 spore-specific isoforms... 6/
March 18, 2025 at 1:55 PM
This matters because the current view is bioenergetics are only resumed once the spore is fully hydrated, which means processes early in germination cannot be powered as there is no energy. But now, there's energy and so there's room for active transport, macromolecular synthesis and... 5/
March 18, 2025 at 1:55 PM
The signalling kinetics are faster without O2 as more nutrient is available for receptor activation. The kinetics can be slowed down by deletion of a spore specific bd oxidase in the respiratory chain (more on this later) - hence the signalling is semi-dependent on bioenergetics 4/
March 18, 2025 at 1:55 PM
Well, we show that basically there are two processes that occur semi-independently in germinating spores: a signalling pathway that alerts the spore to nutrient availability and triggers rehydration, and nutrient-driven bioenergetics - both start simultaneously. 3/
March 18, 2025 at 1:55 PM
Spores are known to be energetically depleted, so the question is whether they need to restart energetics to be able to germinate (is germination an active process)? Germination (decrease in optical density as spores rehydrate) can be initiated with non-nutrient salts and without O2, so no? 2/
March 18, 2025 at 1:55 PM