Peter Kerpedjiev
banner
pkerpedjiev.bsky.social
Peter Kerpedjiev
@pkerpedjiev.bsky.social
I respect the sentiment and effort but you know what they say… “Never wrestle with pigs. You both get dirty and the pig likes it.”
February 15, 2025 at 3:47 PM
Let me rephrase that... do you ever view graph genomes / pan genomes in a genome browser? Genespace looks like it has some functionality but it looks like UCSC's Genome Graphs refers to something different:

genome.ucsc.edu/cgi-bin/hgGe...
Human Genome Graphs
genome.ucsc.edu
January 16, 2025 at 4:29 AM
Wow, what a tour! Thank you!!

Do you know if any genome browsers currently support human scale graph genome visualizations? Or if not, then smaller ones?
January 16, 2025 at 4:22 AM
Apologies for the silly question but is there more to a pangenome beyond a clustering / tree of genes or proteins? I was looking at this tutorial and couldn't really tell:

github.com/microgenomic...
github.com
January 15, 2025 at 9:29 PM