Phoebe Oldach
@phoebeford.bsky.social
Sequencing 🦠🍄🟫🌿 to build an ethical database of biodiversity 🧬 Head of Global Research Program Basecamp Research. Prev genomics DPhil + Delhi Fulbright (she/her)
does anyone have recommendations for super quick TAT high accuracy short read NGS data (ILL or very open to disruptors!) in Boston? Thank you!
April 15, 2025 at 3:48 PM
does anyone have recommendations for super quick TAT high accuracy short read NGS data (ILL or very open to disruptors!) in Boston? Thank you!
Reposted by Phoebe Oldach
Just had a sample of the Eaton Fire ash that is in my driveway run on the department XRF. Is there titanium (new house paint)? Yup. Lead (old house paint)? You betcha. Heavy metals? Check. Treat that ash like it's toxic folks (because it is)
January 17, 2025 at 7:49 PM
Just had a sample of the Eaton Fire ash that is in my driveway run on the department XRF. Is there titanium (new house paint)? Yup. Lead (old house paint)? You betcha. Heavy metals? Check. Treat that ash like it's toxic folks (because it is)
Reposted by Phoebe Oldach
🗻 Basecamp Research's Oliver Vince is headed to #Davos2025. This year’s #WEF theme, "Collaboration for the Intelligent Age," aligns with our mission to build a global network of biodiversity partnerships to train next-gen AI.
📅 Want to connect in Davos? Reach out at explore@basecamp-research.com.
📅 Want to connect in Davos? Reach out at explore@basecamp-research.com.
January 16, 2025 at 5:01 PM
🗻 Basecamp Research's Oliver Vince is headed to #Davos2025. This year’s #WEF theme, "Collaboration for the Intelligent Age," aligns with our mission to build a global network of biodiversity partnerships to train next-gen AI.
📅 Want to connect in Davos? Reach out at explore@basecamp-research.com.
📅 Want to connect in Davos? Reach out at explore@basecamp-research.com.
has anyone run nanopore sequencing on biotinylated DNA? I have seen it in this paper but not since - would love to have a chat with anyone with experience! academic.oup.com/nar/article/...
Detection of base analogs incorporated during DNA replication by nanopore sequencing
Abstract. DNA synthesis is a fundamental requirement for cell proliferation and DNA repair, but no single method can identify the location, direction and s
academic.oup.com
January 14, 2025 at 11:06 PM
has anyone run nanopore sequencing on biotinylated DNA? I have seen it in this paper but not since - would love to have a chat with anyone with experience! academic.oup.com/nar/article/...
Reposted by Phoebe Oldach
🧬We're excited to share a series of announcements: John Finn has joined Basecamp Research as CSO, we've opened a US office and lab & we built one of Europe's largest industrial supercomputers with NVIDIA Accelerated Computing. Read Fierce Biotech's story here: www.fiercebiotech.com/research/com...
:
:
January 6, 2025 at 12:31 PM
🧬We're excited to share a series of announcements: John Finn has joined Basecamp Research as CSO, we've opened a US office and lab & we built one of Europe's largest industrial supercomputers with NVIDIA Accelerated Computing. Read Fierce Biotech's story here: www.fiercebiotech.com/research/com...
:
:
Reposted by Phoebe Oldach
sunburn is from ribosomes stalled by UV damage to RNA? super cool www.sciencedirect.com/science/arti...
The ribotoxic stress response drives acute inflammation, cell death, and epidermal thickening in UV-irradiated skin in vivo
Solar UVB light causes damage to the outermost layer of skin. This insult induces rapid local responses, such as dermal inflammation, keratinocyte cel…
www.sciencedirect.com
November 27, 2024 at 1:22 AM
sunburn is from ribosomes stalled by UV damage to RNA? super cool www.sciencedirect.com/science/arti...
Reposted by Phoebe Oldach
Advancement of openness requires consideration and integration with indigenous data sovereignty. See the Science piece and my conversation yesterday with Keolu Fox for advancements in this critical area for open science. www.youtube.com/watch?v=41Xa...
October 25, 2024 at 4:33 PM
Advancement of openness requires consideration and integration with indigenous data sovereignty. See the Science piece and my conversation yesterday with Keolu Fox for advancements in this critical area for open science. www.youtube.com/watch?v=41Xa...
Reposted by Phoebe Oldach
▶️ Basecamp Research’s new access and benefit-sharing partnership with the government of Cameroon includes a model for sharing data and resources to further research and protect local biodiversity: www.biopharmatrend.com/post/904-bas...
Basecamp Research Partners with Cameroon to Share Benefits from Genetic Data Use in Landmark Agreement
www.biopharmatrend.com
September 9, 2024 at 8:29 PM
▶️ Basecamp Research’s new access and benefit-sharing partnership with the government of Cameroon includes a model for sharing data and resources to further research and protect local biodiversity: www.biopharmatrend.com/post/904-bas...
Reposted by Phoebe Oldach
Though our work differs from Netflix, Basecamp Research shares one similarity: Our data is growing by an order of magnitude every year. As we build a digital twin of the natural world, our data expands exponentially. Read our CTO Phil Lorenz's insights in the FT's Sifted: sifted.eu/intelligence...
November 21, 2024 at 5:54 PM
Though our work differs from Netflix, Basecamp Research shares one similarity: Our data is growing by an order of magnitude every year. As we build a digital twin of the natural world, our data expands exponentially. Read our CTO Phil Lorenz's insights in the FT's Sifted: sifted.eu/intelligence...
Reposted by Phoebe Oldach
Leveraging genomes to support conservation and bioeconomy policies in a megadiverse country. #Genomics #BiodiversityConservation #GenomicsBrazilianBiodiversity #CellGenomics 🧬
www.cell.com/cell-genomic...
www.cell.com/cell-genomic...
Leveraging genomes to support conservation and bioeconomy policies in a megadiverse country
Vilaça et al. described a unique private-public initiative, the Genomics of the Brazilian
Biodiversity (GBB) consortium. They outline the goals and challenges faced so far
and discuss the gaps concern...
www.cell.com
November 16, 2024 at 5:35 PM
Leveraging genomes to support conservation and bioeconomy policies in a megadiverse country. #Genomics #BiodiversityConservation #GenomicsBrazilianBiodiversity #CellGenomics 🧬
www.cell.com/cell-genomic...
www.cell.com/cell-genomic...
Reposted by Phoebe Oldach
Real genotype-to-phenotype is now much closer in this beautiful work on a genomic foundation model from @brianhie.bsky.social. www.science.org/doi/10.1126/...
Sequence modeling and design from molecular to genome scale with Evo
The genome is a sequence that encodes the DNA, RNA, and proteins that orchestrate an organism’s function. We present Evo, a long-context genomic foundation model with a frontier architecture trained o...
www.science.org
November 16, 2024 at 11:29 AM
Real genotype-to-phenotype is now much closer in this beautiful work on a genomic foundation model from @brianhie.bsky.social. www.science.org/doi/10.1126/...
Thanks to vox for highlighting some of the COP16 discussions on how biotech valorizarion of digital sequence information can be shared back to biodiversity stakeholders - this is central to what we do at Basecamp.
www.vox.com/down-to-eart...
www.vox.com/down-to-eart...
A groundbreaking new plan to get Big Pharma to pay for wildlife conservation
Big companies use DNA from wild organisms to make money. This new plan aims to make them pay for it.
www.vox.com
November 17, 2024 at 11:55 AM
Thanks to vox for highlighting some of the COP16 discussions on how biotech valorizarion of digital sequence information can be shared back to biodiversity stakeholders - this is central to what we do at Basecamp.
www.vox.com/down-to-eart...
www.vox.com/down-to-eart...
Reposted by Phoebe Oldach
Some thoughts on this call to action:
I am very optimistic on future applications of industrial and environmental microbiology for environmental remediation and sustainable bioproduction - it's a big interest of mine! - but some caveats to be realistic about:
1/n
academic.oup.com/ismej/articl...
I am very optimistic on future applications of industrial and environmental microbiology for environmental remediation and sustainable bioproduction - it's a big interest of mine! - but some caveats to be realistic about:
1/n
academic.oup.com/ismej/articl...
Microbial solutions must be deployed against climate catastrophe
The climate crisis is escalating. A multitude of microbe-based solutions have been proposed (Table 1), and these technologies hold great promise and could
academic.oup.com
November 11, 2024 at 10:06 PM
Some thoughts on this call to action:
I am very optimistic on future applications of industrial and environmental microbiology for environmental remediation and sustainable bioproduction - it's a big interest of mine! - but some caveats to be realistic about:
1/n
academic.oup.com/ismej/articl...
I am very optimistic on future applications of industrial and environmental microbiology for environmental remediation and sustainable bioproduction - it's a big interest of mine! - but some caveats to be realistic about:
1/n
academic.oup.com/ismej/articl...
Reposted by Phoebe Oldach
Bluesky for Science
Starter packs for genomics, bioinformatics, #Rstats, Nextflow. Moderation lists. Feeds. Let's rebuild the old scitwitter community and keep this place nice
blog.stephenturner.us/p/bluesky-fo... 🧬🖥️🧪
Starter packs for genomics, bioinformatics, #Rstats, Nextflow. Moderation lists. Feeds. Let's rebuild the old scitwitter community and keep this place nice
blog.stephenturner.us/p/bluesky-fo... 🧬🖥️🧪
Bluesky for Science
Bluesky starter packs for genomics, bioinformatics, R, and Nextflow
blog.stephenturner.us
November 16, 2024 at 10:25 AM
Bluesky for Science
Starter packs for genomics, bioinformatics, #Rstats, Nextflow. Moderation lists. Feeds. Let's rebuild the old scitwitter community and keep this place nice
blog.stephenturner.us/p/bluesky-fo... 🧬🖥️🧪
Starter packs for genomics, bioinformatics, #Rstats, Nextflow. Moderation lists. Feeds. Let's rebuild the old scitwitter community and keep this place nice
blog.stephenturner.us/p/bluesky-fo... 🧬🖥️🧪