Philipp Niethammer
@niethammerlab.bsky.social
Cell biologist interested in how tissues sense and adapt to physical and chemical stress. Wound healing and regeneration. Quantitative imaging approaches. Nuclear mechanotransduction, ROS signaling & metabolism. All opinions are my own.
Clearly, a swelling nucleus 😊
October 19, 2025 at 6:56 PM
Clearly, a swelling nucleus 😊
The revised version (a.i.p. @ NCB) features super-resolution imaging of ER vesiculation as well as a quantitative, long-term time lapse analysis of nuclear membrane mechanotransduction (NMMT) during cell death, besides various other critical improvements.
October 10, 2025 at 1:04 PM
The revised version (a.i.p. @ NCB) features super-resolution imaging of ER vesiculation as well as a quantitative, long-term time lapse analysis of nuclear membrane mechanotransduction (NMMT) during cell death, besides various other critical improvements.
Just added a sample count sheet (from Huang & Niethammer, Immunity, 2018) and some databases (sfGO, FishSCT, etc.) to try out and see how the files need to be formatted. Hope this helps!
September 9, 2025 at 6:57 PM
Just added a sample count sheet (from Huang & Niethammer, Immunity, 2018) and some databases (sfGO, FishSCT, etc.) to try out and see how the files need to be formatted. Hope this helps!
Background on conceptual clustering: en.m.wikipedia.org/wiki/Concept...
Conceptual clustering - Wikipedia
en.m.wikipedia.org
September 9, 2025 at 11:19 AM
Background on conceptual clustering: en.m.wikipedia.org/wiki/Concept...
www.mathworks.com
September 9, 2025 at 11:05 AM
Yes, by adjusting an experimental count sheet (published or your own) to the parsable naming convention (see manual) you can integrate it. Same for any other knowledge database, like GO, custom scRNAseq marker sets, etc. LCS can integrate everything into a single network graph.
September 9, 2025 at 10:27 AM
Yes, by adjusting an experimental count sheet (published or your own) to the parsable naming convention (see manual) you can integrate it. Same for any other knowledge database, like GO, custom scRNAseq marker sets, etc. LCS can integrate everything into a single network graph.
Humanties and STEM belong together - contemplative and calculative thinking are two sides of the same coin: curiosity.
July 30, 2025 at 9:00 AM
Humanties and STEM belong together - contemplative and calculative thinking are two sides of the same coin: curiosity.