neurosoup.bsky.social
@neurosoup.bsky.social
Data and bioinformatics self.

Check out my metagenomics newsletter at https://marineomics.substack.com/?r=ger3g&utm_campaign=pub-share-checklist
🦠2nd EMO-BON marine omics data and analysis session open for questions, and with a PCoA demo.

🗓️ Fri, June 6, 15:30 CEST
🔗 Zoom: videoconf-colibri.zoom.us/j/94984890806

📬 Subscribe:
Fair-Ease newsletter: fairease.eu#newsletter

💡 Everyone’s welcome, it is meant to be as OPEN and FAIR as possible.
June 3, 2025 at 10:56 PM
⏰ New dashboard to peek into interaction networks of EMO-BON marine microbiome data.

📺 dashboard: github.com/emo-bon/momi...

📔 Tutorial with more poetry around it: lab.fairease.eu/book-marine-...

Feature suggests, complaints and science colabs welcome🙌
May 29, 2025 at 5:28 PM
I'll be hosting EMO-BON metagenomics data starter kit session this Friday, 14:30 Lisbon time.

Join LinkedIn stream
www.linkedin.com/events/part1...

Or via zoom: lnkd.in/da4qQ_Wv

@embrc-eu.bsky.social @ccmar.bsky.social
Part1: EMO-BON metagenomics data starter kit | LinkedIn
Background on the sequencing data, helpdesk.
www.linkedin.com
May 14, 2025 at 4:23 PM
Reposted
This Wednesday, NICO is thrilled to host David Lazer (@davidlazer.bsky.social) from Northeastern University to discuss the emergent and sometimes paradoxical logic of the internet news ecosystem. Join us in person in Chambers Hall or online via Zoom.

🗓️ Wed 4/23 at 12pm US Central
🔗 bit.ly/WedatNICO
April 22, 2025 at 9:27 PM
Anyone read "We Are Not Able to Live in the Sky: The Seductive Promise of Microfinance"? I am still recommending
#kiva but together with checking their payrolls, I do not donate to them any more.

www.kiva.org/invitedby/da...
Kiva - Join David on Kiva
Support women, entrepreneurs, students and refugees around the world with as little as $25 on Kiva. 100% of your loans go to support borrowers.
www.kiva.org
April 20, 2025 at 2:48 PM
Did you know you can run Holoviz #panel dashboard on Google Colab via #ngrok? I find it significantly faster than #mybinder.

github.com/emo-bon/momi...

Plus you can check some EMO-BON metagenomics data pouring in (by @embrc-eu.bsky.social).

#panel #fair-ease #holoviz #dashboard #metagenomics
April 11, 2025 at 5:19 PM
Once he can sink the markets, he can also trigger a rally at any moment by abandoning the tariffs The correctly informed people will make fortune. Is it going to be today? Perhaps one more dip gives better upside.
April 2, 2025 at 9:26 AM
❔As a novice to @nf-co.re I tried to create a workflow for synthetic metagenomics data generation (wrapper of @insilicoseq) for @pikavirus pipeline during their hackathon. What would be your choice instead of @insilicoseq?

github.com/palec87/pika...
GitHub - palec87/pikavirus-sim-data: Generate simulated data for pikavirus banchmarks
Generate simulated data for pikavirus banchmarks. Contribute to palec87/pikavirus-sim-data development by creating an account on GitHub.
github.com
March 27, 2025 at 11:26 AM
Building marine omics pilots for @embrc-eu.bsky.social sampling and shotgun sequencing (>1K events, 15+ stations).

🐍 Dashboards served from Jupyter NBs
🛠️ Back-end to EVENTUALLY provide the most OPEN and FAIR data/tools
⛑️ Ping me to collaborate

Repo: github.com/emo-bon/momi...
F-E: www.fairease.eu
March 12, 2025 at 4:46 PM
Reposted
🎉 Zarr-Python 3 is here! 🎉

- Full support for Zarr v3 spec
- Chunk-sharding for more efficient data storage
- Major performance boosts with async I/O & parallel compression

💻 pip install --upgrade zarr
💻 conda install --channel conda-forge zarr

Blog post: https://buff.ly/3C3OwYw
January 9, 2025 at 4:28 PM
Reposted
I did not have that people outperform computers in terms of cost on my bingo card: arcprize.org/blog/oai-o3-...
OpenAI o3 Breakthrough High Score on ARC-AGI-Pub
OpenAI o3 scores 75.7% on ARC-AGI public leaderboard.
arcprize.org
December 20, 2024 at 6:34 PM
Reposted
Foresight is key to preparing for future challenges.

Ahead of 2025, this year’s Global Foresight report outlines 8 signals of change, offering a glimpse into potential disruptions, positive & negative, which could impact our planet. unep.org/resources/gl... #YearInReview
December 18, 2024 at 9:04 AM
We will have a puzzle solving session of AOC at campus Gambelas in Faro, this wednesday, #ualg #ccmar #mostlypython

www.linkedin.com/feed/update/...

I've completed "Red-Nosed Reports" - Day 2 - Advent of Code 2024 #AdventOfCode adventofcode.com/2024/day/2
Day 2 - Advent of Code 2024
adventofcode.com
December 2, 2024 at 5:59 PM
Who is doing AOC in Algarve or Portugal in general? Btw. it is not late to join!

I just completed "Historian Hysteria" - Day 1 - Advent of Code 2024 #AdventOfCode adventofcode.com/2024/day/1
Day 1 - Advent of Code 2024
adventofcode.com
December 2, 2024 at 1:19 PM