Nico Kaiser
@n-kaiser.bsky.social
PhD student in the field of computational microscopy and spatial omics.
Reposted by Nico Kaiser
Preprint alert 🚨 Do you use chatbots in your work or even build MCP servers and agentic systems yourself?
Or would you like to find a way to use biomedical tools using natural language?
Then check out biocontext.ai, now out on bioRxiv: www.biorxiv.org/content/10.1...
Or would you like to find a way to use biomedical tools using natural language?
Then check out biocontext.ai, now out on bioRxiv: www.biorxiv.org/content/10.1...
July 29, 2025 at 12:41 PM
Preprint alert 🚨 Do you use chatbots in your work or even build MCP servers and agentic systems yourself?
Or would you like to find a way to use biomedical tools using natural language?
Then check out biocontext.ai, now out on bioRxiv: www.biorxiv.org/content/10.1...
Or would you like to find a way to use biomedical tools using natural language?
Then check out biocontext.ai, now out on bioRxiv: www.biorxiv.org/content/10.1...
Reposted by Nico Kaiser
Community-based biomedical context to unlock agentic systems https://www.biorxiv.org/content/10.1101/2025.07.21.665729v1
July 25, 2025 at 5:04 PM
Community-based biomedical context to unlock agentic systems https://www.biorxiv.org/content/10.1101/2025.07.21.665729v1
Reposted by Nico Kaiser
🚨Scaling multiplexed imaging 📈 We are excited to share Pathology-oriented multiPlexing (PathoPlex). Now out in @nature.com: www.nature.com/articles/s41...
🧵Walk-through thread below ⬇️
🧵Walk-through thread below ⬇️
July 18, 2025 at 1:31 PM
🚨Scaling multiplexed imaging 📈 We are excited to share Pathology-oriented multiPlexing (PathoPlex). Now out in @nature.com: www.nature.com/articles/s41...
🧵Walk-through thread below ⬇️
🧵Walk-through thread below ⬇️
Reposted by Nico Kaiser
Happy to share that pytximport has now been included in the December issue of Bioinformatics and can be read online without downloading the PDF: doi.org/10.1093/bioi...
December 5, 2024 at 3:23 PM
Happy to share that pytximport has now been included in the December issue of Bioinformatics and can be read online without downloading the PDF: doi.org/10.1093/bioi...
Reposted by Nico Kaiser
You can now run tximport in Python with pytximport thanks to @compmed.bsky.social et al. academic.oup.com/bioinformati...
Gene count estimation with pytximport enables reproducible analysis of bulk RNA sequencing data in Python
AbstractSummary. Transcript quantification tools efficiently map bulk RNA sequencing reads to reference transcriptomes. However, their output consists of t
academic.oup.com
November 21, 2024 at 12:19 AM
You can now run tximport in Python with pytximport thanks to @compmed.bsky.social et al. academic.oup.com/bioinformati...
Reposted by Nico Kaiser
Thanks for sharing! Looking forward to see what more options to use data from kallisto & others with scientific python and @scverse.bsky.social ecosystem tools will enable
You can now run tximport in Python with pytximport thanks to @compmed.bsky.social et al. academic.oup.com/bioinformati...
Gene count estimation with pytximport enables reproducible analysis of bulk RNA sequencing data in Python
AbstractSummary. Transcript quantification tools efficiently map bulk RNA sequencing reads to reference transcriptomes. However, their output consists of t
academic.oup.com
November 21, 2024 at 8:49 AM
Thanks for sharing! Looking forward to see what more options to use data from kallisto & others with scientific python and @scverse.bsky.social ecosystem tools will enable