Clint Valentine
@moonlight.bio
Interested in the molecular patterns of carcinogenesis, adventure racing, bioinformatics, and hand-rolled pasta. Professional crud & stuff wrangler, aspiring artisanal software author.
I do this! I encode first, and provide a "was UTF-8 encoded" marker in the INFO header so I auto-detect when I've done it and decode when reading. Helpers here:
github.com/clintval/tp5...
^ not actually encoding JSON in that tool, but other kinds of structured text with chars that are illegal.
github.com/clintval/tp5...
^ not actually encoding JSON in that tool, but other kinds of structured text with chars that are illegal.
tp53/scala/seshat/src/io/cvbio/seshat/VcfUtil.scala at 400b3e35f83175dfe59891cbc6906f2cfb7738c4 · clintval/tp53
Tools for programmatically annotating VCFs with the Seshat TP53 database - clintval/tp53
github.com
November 7, 2025 at 8:51 PM
I do this! I encode first, and provide a "was UTF-8 encoded" marker in the INFO header so I auto-detect when I've done it and decode when reading. Helpers here:
github.com/clintval/tp5...
^ not actually encoding JSON in that tool, but other kinds of structured text with chars that are illegal.
github.com/clintval/tp5...
^ not actually encoding JSON in that tool, but other kinds of structured text with chars that are illegal.
This is pretty cool. Thanks for sharing! Yes it indeed looks like me :)
October 30, 2024 at 8:35 PM
This is pretty cool. Thanks for sharing! Yes it indeed looks like me :)