Minyu Chan
@minyuchan.bsky.social
PhD Student at Monash University | The Clive and Vera Ramaciotti Centre for Cryo-EM | Utilizing multi-modal volume imaging systems to uncover the developmental changes in habenular fasciculature.
Reposted by Minyu Chan
Save the date! The Open Software Summer School returns August 17-28 2026 in London, U.K.
There will be four separate tracks on animal behaviour, extracellular electrophysiology, anatomy and handling large data.
Applications open Dec 1st.
More details:
neuroinformatics.dev/open-softwar...
There will be four separate tracks on animal behaviour, extracellular electrophysiology, anatomy and handling large data.
Applications open Dec 1st.
More details:
neuroinformatics.dev/open-softwar...
October 31, 2025 at 3:25 PM
Save the date! The Open Software Summer School returns August 17-28 2026 in London, U.K.
There will be four separate tracks on animal behaviour, extracellular electrophysiology, anatomy and handling large data.
Applications open Dec 1st.
More details:
neuroinformatics.dev/open-softwar...
There will be four separate tracks on animal behaviour, extracellular electrophysiology, anatomy and handling large data.
Applications open Dec 1st.
More details:
neuroinformatics.dev/open-softwar...
Come visit our @volumeem1.bsky.social Tech Forum 2026 Poster at the Imaging Southeast Asia Conference 2025, happening in two weeks from 12-13th November 2025 🤩🎉
October 30, 2025 at 1:05 PM
Come visit our @volumeem1.bsky.social Tech Forum 2026 Poster at the Imaging Southeast Asia Conference 2025, happening in two weeks from 12-13th November 2025 🤩🎉
All prepped and ready to go for Imaging South East Asia (iSEA) Conference 2025 - happening in two weeks from 12-13th November 2025 at Monash University Malaysia 🤩
Be sure to check out this #PosterPresentation at the event!
@georgramm.bsky.social
Be sure to check out this #PosterPresentation at the event!
@georgramm.bsky.social
October 30, 2025 at 1:02 PM
All prepped and ready to go for Imaging South East Asia (iSEA) Conference 2025 - happening in two weeks from 12-13th November 2025 at Monash University Malaysia 🤩
Be sure to check out this #PosterPresentation at the event!
@georgramm.bsky.social
Be sure to check out this #PosterPresentation at the event!
@georgramm.bsky.social
Posters printed! All set for Imaging SEA Conference 2025! Shoutout to ArchPrint for their amazing service!
October 30, 2025 at 9:28 AM
Posters printed! All set for Imaging SEA Conference 2025! Shoutout to ArchPrint for their amazing service!
4th gen synchrotrons’ capabilities for ptychographic imaging of biological soft tissue is next level crazy. Insane symposium so far at @thecrick
Makes me wonder what will become of 3rd gen researchers and those who do correlative imaging.
Makes me wonder what will become of 3rd gen researchers and those who do correlative imaging.
October 13, 2025 at 4:16 PM
4th gen synchrotrons’ capabilities for ptychographic imaging of biological soft tissue is next level crazy. Insane symposium so far at @thecrick
Makes me wonder what will become of 3rd gen researchers and those who do correlative imaging.
Makes me wonder what will become of 3rd gen researchers and those who do correlative imaging.
Reposted by Minyu Chan
New blog post!
Last year, I wrote some data visualization tips and pitfalls for a workshop, and I now ported it over to a @quarto.org manuscript with references and source code for the figures.
Check it out here!
marcodallavecchia.gitlab.io/web/blog/dos...
Last year, I wrote some data visualization tips and pitfalls for a workshop, and I now ported it over to a @quarto.org manuscript with references and source code for the figures.
Check it out here!
marcodallavecchia.gitlab.io/web/blog/dos...
Dos and Don’ts of data visualization – marcodallavecchia/web
A few sample cases to understand the importance of proper data visualization
marcodallavecchia.gitlab.io
October 10, 2025 at 6:59 AM
New blog post!
Last year, I wrote some data visualization tips and pitfalls for a workshop, and I now ported it over to a @quarto.org manuscript with references and source code for the figures.
Check it out here!
marcodallavecchia.gitlab.io/web/blog/dos...
Last year, I wrote some data visualization tips and pitfalls for a workshop, and I now ported it over to a @quarto.org manuscript with references and source code for the figures.
Check it out here!
marcodallavecchia.gitlab.io/web/blog/dos...
Reposted by Minyu Chan
We are incredibly proud to receieve this award, especially as it recognises the hard work of the entire BrainGlobe community.
Thank you to everyone who has contributed to BrainGlobe over the years!
Thank you to everyone who has contributed to BrainGlobe over the years!
🏆Announcing the laureates of the Neuro - Irv and Helga Cooper Foundation Open Science Prizes 2025!
🎉 Join us in celebrating the laureates at the award ceremony, featuring a special lecture from International Prize laureate representative from the BrainGlobe initiative.
#OpenScience #Neuroscience
🎉 Join us in celebrating the laureates at the award ceremony, featuring a special lecture from International Prize laureate representative from the BrainGlobe initiative.
#OpenScience #Neuroscience
The Neuro – Irv and Helga Cooper Foundation Open Science Prizes: Meet the winners of an exceptional edition
This year’s edition of the Irv and Helga Cooper Foundation Open Science Prizes at The Neuro, organised by the Tanenbaum Open Science Institute, was exceptional in every way. With a record number of ap...
www.mcgill.ca
October 9, 2025 at 7:06 AM
We are incredibly proud to receieve this award, especially as it recognises the hard work of the entire BrainGlobe community.
Thank you to everyone who has contributed to BrainGlobe over the years!
Thank you to everyone who has contributed to BrainGlobe over the years!
Reposted by Minyu Chan
Huge congratulations to the @BrainGlobe.info team for winning the 2025 International Prize awarded by the @theneuro.bsky.social and Helga Cooper Foundation Open Science Prizes Selection Committee 🎉
www.sainsburywellcome.org/web/research...
www.sainsburywellcome.org/web/research...
October 9, 2025 at 2:11 PM
Huge congratulations to the @BrainGlobe.info team for winning the 2025 International Prize awarded by the @theneuro.bsky.social and Helga Cooper Foundation Open Science Prizes Selection Committee 🎉
www.sainsburywellcome.org/web/research...
www.sainsburywellcome.org/web/research...
Reposted by Minyu Chan
🗳️ Voting is now open for the 2025 Volume EM Image Competition!
✅ Vote for your top 3 favorites in each category
🕙 Voting closes October 9 at 4:00 PM BST / 10:00 AM CT
🏆 Winners will be announced at the Town Hall Meeting later that day!
👉 Cast your vote here: www.volumeem.org/vote_awesome...
✅ Vote for your top 3 favorites in each category
🕙 Voting closes October 9 at 4:00 PM BST / 10:00 AM CT
🏆 Winners will be announced at the Town Hall Meeting later that day!
👉 Cast your vote here: www.volumeem.org/vote_awesome...
LinkedIn
This link will take you to a page that’s not on LinkedIn
lnkd.in
October 7, 2025 at 8:51 PM
🗳️ Voting is now open for the 2025 Volume EM Image Competition!
✅ Vote for your top 3 favorites in each category
🕙 Voting closes October 9 at 4:00 PM BST / 10:00 AM CT
🏆 Winners will be announced at the Town Hall Meeting later that day!
👉 Cast your vote here: www.volumeem.org/vote_awesome...
✅ Vote for your top 3 favorites in each category
🕙 Voting closes October 9 at 4:00 PM BST / 10:00 AM CT
🏆 Winners will be announced at the Town Hall Meeting later that day!
👉 Cast your vote here: www.volumeem.org/vote_awesome...
Reposted by Minyu Chan
📣 The Awesome vEM Images Competition is back!
Submit your images in one of two categories:
🖼️ The Power of vEM
🧠 Bringing Meaning to the Data (New!)
🏆 Prizes: $250 for 1st place, $100 for 2nd & 3rd in each category
📅 Deadline: Oct 2, 5PM CT
🔗 More details: www.volumeem.org/awesome-imag...
Submit your images in one of two categories:
🖼️ The Power of vEM
🧠 Bringing Meaning to the Data (New!)
🏆 Prizes: $250 for 1st place, $100 for 2nd & 3rd in each category
📅 Deadline: Oct 2, 5PM CT
🔗 More details: www.volumeem.org/awesome-imag...
Awesome image competition - 2025
📸 We are seeking impressive volume EM (vEM) images as part of our mission to promote our Volume EM Community Initiative and vEM techniques to the world! We'd love to offer you the opportunity to...
www.volumeem.org
August 24, 2025 at 3:37 PM
📣 The Awesome vEM Images Competition is back!
Submit your images in one of two categories:
🖼️ The Power of vEM
🧠 Bringing Meaning to the Data (New!)
🏆 Prizes: $250 for 1st place, $100 for 2nd & 3rd in each category
📅 Deadline: Oct 2, 5PM CT
🔗 More details: www.volumeem.org/awesome-imag...
Submit your images in one of two categories:
🖼️ The Power of vEM
🧠 Bringing Meaning to the Data (New!)
🏆 Prizes: $250 for 1st place, $100 for 2nd & 3rd in each category
📅 Deadline: Oct 2, 5PM CT
🔗 More details: www.volumeem.org/awesome-imag...
Reposted by Minyu Chan
🌟 Awesome vEM Images Competition deadline extended to Oct 6, 5 PM CT! 🌟
Submit to one or both categories:
1️⃣ The Power of EM
2️⃣ Bringing Meaning to the Data
🏆 $250 for 1st, $100 for 2nd & 3rd (each category)
🔗 www.volumeem.org/awesome-imag...
Details and last year's winning images ⬇️
Submit to one or both categories:
1️⃣ The Power of EM
2️⃣ Bringing Meaning to the Data
🏆 $250 for 1st, $100 for 2nd & 3rd (each category)
🔗 www.volumeem.org/awesome-imag...
Details and last year's winning images ⬇️
September 29, 2025 at 9:40 AM
🌟 Awesome vEM Images Competition deadline extended to Oct 6, 5 PM CT! 🌟
Submit to one or both categories:
1️⃣ The Power of EM
2️⃣ Bringing Meaning to the Data
🏆 $250 for 1st, $100 for 2nd & 3rd (each category)
🔗 www.volumeem.org/awesome-imag...
Details and last year's winning images ⬇️
Submit to one or both categories:
1️⃣ The Power of EM
2️⃣ Bringing Meaning to the Data
🏆 $250 for 1st, $100 for 2nd & 3rd (each category)
🔗 www.volumeem.org/awesome-imag...
Details and last year's winning images ⬇️
Reposted by Minyu Chan
DeMBA (Developmental Mouse Brain Atlas) has now been added to BrainGlobe!
This includes every developmental stage from P4 to P56. Each of these 53 atlases includes MRI, LSFM and STPT templates.
For more details, see the blog:
brainglobe.info/blog/DeMBA
Paper:
doi.org/10.1038/s414...
This includes every developmental stage from P4 to P56. Each of these 53 atlases includes MRI, LSFM and STPT templates.
For more details, see the blog:
brainglobe.info/blog/DeMBA
Paper:
doi.org/10.1038/s414...
September 15, 2025 at 2:40 PM
DeMBA (Developmental Mouse Brain Atlas) has now been added to BrainGlobe!
This includes every developmental stage from P4 to P56. Each of these 53 atlases includes MRI, LSFM and STPT templates.
For more details, see the blog:
brainglobe.info/blog/DeMBA
Paper:
doi.org/10.1038/s414...
This includes every developmental stage from P4 to P56. Each of these 53 atlases includes MRI, LSFM and STPT templates.
For more details, see the blog:
brainglobe.info/blog/DeMBA
Paper:
doi.org/10.1038/s414...
Reposted by Minyu Chan
In our next guest blog, GSoC participant Saarah Hussain talks about her summer working on @brainglobe.info.
neuroinformatics.dev/blog/gsoc_20...
neuroinformatics.dev/blog/gsoc_20...
September 15, 2025 at 1:36 PM
In our next guest blog, GSoC participant Saarah Hussain talks about her summer working on @brainglobe.info.
neuroinformatics.dev/blog/gsoc_20...
neuroinformatics.dev/blog/gsoc_20...
Reposted by Minyu Chan
Want to hack with ~40 motivated developers in the OME-Zarr space this fall in Zurich, November 12 - 14th? The application window for the 2025 OME-NGFF workflows hackathon is closing on September 30th! Apply here to be part of this exciting week about OME-Zarr: forms.gle/849cf2fBk1pJ...
September 18, 2025 at 9:42 AM
Want to hack with ~40 motivated developers in the OME-Zarr space this fall in Zurich, November 12 - 14th? The application window for the 2025 OME-NGFF workflows hackathon is closing on September 30th! Apply here to be part of this exciting week about OME-Zarr: forms.gle/849cf2fBk1pJ...
Reposted by Minyu Chan
The BrainGlobe track started with an introduction to image analysis with @napari.org, and then tutorials on how to use @brainglobe.info to register data to atlases, and how to detect cells in whole-brain microscopy images.
All our tutorials are online: brainglobe.info/tutorials
#niu_osw
All our tutorials are online: brainglobe.info/tutorials
#niu_osw
August 12, 2025 at 3:53 PM
The BrainGlobe track started with an introduction to image analysis with @napari.org, and then tutorials on how to use @brainglobe.info to register data to atlases, and how to detect cells in whole-brain microscopy images.
All our tutorials are online: brainglobe.info/tutorials
#niu_osw
All our tutorials are online: brainglobe.info/tutorials
#niu_osw
Reposted by Minyu Chan
The third day of Open Software Week is underway. On the @brainglobe.info track, students are learning how to use the BrainGlobe Python ecosystem to write their own scripts.
Starting with creating visualisations using brainglobe-heatmap:
brainglobe.info/documentatio...
#niu_osw
Starting with creating visualisations using brainglobe-heatmap:
brainglobe.info/documentatio...
#niu_osw
August 13, 2025 at 9:51 AM
The third day of Open Software Week is underway. On the @brainglobe.info track, students are learning how to use the BrainGlobe Python ecosystem to write their own scripts.
Starting with creating visualisations using brainglobe-heatmap:
brainglobe.info/documentatio...
#niu_osw
Starting with creating visualisations using brainglobe-heatmap:
brainglobe.info/documentatio...
#niu_osw
Reposted by Minyu Chan
Thank you to everyone who came to Open Software Week. We had a great time, and we hope you all left with new knowledge, ideas or collaborations.
#niu_osw
#niu_osw
August 15, 2025 at 8:12 PM
Thank you to everyone who came to Open Software Week. We had a great time, and we hope you all left with new knowledge, ideas or collaborations.
#niu_osw
#niu_osw
Upcoming paper alert ‼️
Our literature review titled GPR139, an ancient receptor and an emerging target for neuropsychiatric and behavioral disorders, has passed peer review and is recommended for publication in Molecular Neurobiology (Springer Nature, IF 4.6) 🥳
Our literature review titled GPR139, an ancient receptor and an emerging target for neuropsychiatric and behavioral disorders, has passed peer review and is recommended for publication in Molecular Neurobiology (Springer Nature, IF 4.6) 🥳
February 14, 2025 at 4:38 AM
Upcoming paper alert ‼️
Our literature review titled GPR139, an ancient receptor and an emerging target for neuropsychiatric and behavioral disorders, has passed peer review and is recommended for publication in Molecular Neurobiology (Springer Nature, IF 4.6) 🥳
Our literature review titled GPR139, an ancient receptor and an emerging target for neuropsychiatric and behavioral disorders, has passed peer review and is recommended for publication in Molecular Neurobiology (Springer Nature, IF 4.6) 🥳
Some nice photos I took around town 🇲🇾
February 13, 2025 at 7:34 AM
Some nice photos I took around town 🇲🇾
Putting this RTX4090 to work 🥵 Segmentations ✅ Now on to the analysis! Computing anisotropic measurements and volume fractions for this ROI. Interesting to visualise the spatial distribution using mathematics. @georgramm.bsky.social exciting things happening here in Malaysia 🇲🇾
February 13, 2025 at 7:21 AM
Putting this RTX4090 to work 🥵 Segmentations ✅ Now on to the analysis! Computing anisotropic measurements and volume fractions for this ROI. Interesting to visualise the spatial distribution using mathematics. @georgramm.bsky.social exciting things happening here in Malaysia 🇲🇾