Mahan Ghafari
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mghafari.bsky.social
Mahan Ghafari
@mghafari.bsky.social
Molecular evolution of pathogens | Wellcome Trust Fellow @biology.ox.ac.uk | Independent Investigator Data Analytics & Epi Group @psioxford.bsky.social | MedSci Fellow @lincoln.ox.ac.uk‬ | Oxford DTP & Zoology alum | https://users.ox.ac.uk/~univ4613/
Huge congrats, Spyros! Pasteur is very lucky to have you.
November 15, 2025 at 8:54 AM
Yes, exciting times ahead! :)
November 4, 2025 at 1:36 PM
Thanks @tah-sci.com!
October 15, 2025 at 8:27 PM
how is the syn vs nonsyn MOV context score/likelihood calculated in these cases?
August 28, 2025 at 8:53 PM
Grateful to @ryanhisner.bsky.social for his thoughtful comments on the work. Huge thanks also to the incredible ONS-CIS team—especially Sarah Walker—for making this study possible, and to Katrina Lythgoe for her leadership throughout.
July 30, 2025 at 11:47 AM
We analysed 576 persistent infections and found:
– More common in men & those >60yrs
– Most variation driven by nonsynonymous mutations, esp. in spike NTD & RBD
– Longer infection → higher viral clock rates
– Onward transmission is rare
– Only ~2% showed viral rates on par with highly divergent VOCs
July 30, 2025 at 11:47 AM
But I also think that leaving when I did was the right move. And to fellow academics affected by this — you’re not alone. And to colleagues in the US: please speak up, advocate for inclusion, and keep those bridges open however you can. Science doesn’t thrive in isolation. And neither do we.
June 7, 2025 at 9:58 AM
I’ve been very fortunate in my academic journey and the support I’ve found elsewhere. But it’s disheartening to think how many doors remain closed for reasons far beyond our control. I still carry a deep appreciation for my time in the US — mentors, friends, opportunities.
June 7, 2025 at 9:58 AM
Well, it didn’t, did it? And now, years later, we’re watching history repeat itself — not just in policy, but in the way it quietly redirects the paths of young researchers who simply want to engage, collaborate, and contribute to global science. A lot has changed in my life since then.
June 7, 2025 at 9:58 AM
Sorry, my fault—sent the wrong link! This one should work: stanford.zoom.us/meeting/regi...
Society for Modeling and Theory in Population Biology - Mini-Symposium: Theory in understanding viral dynamics and evolution
smtpb.org
May 13, 2025 at 8:04 AM