Ana Marija Jakšić
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merianelion.bsky.social
Ana Marija Jakšić
@merianelion.bsky.social
Group leader @ Jaksic Lab, EPFL, ELISIR scholar, Drosophila, Neuroscience, Topology, Robots, Evolution, PopGen, Cognition, Corals, she/her, Trekkie utopian 🦄🧬🪰🧠🪸🇪🇺🇨🇭🇭🇷 🌍🖖🏻 On the faculty job market
Reposted by Ana Marija Jakšić
4) “the complexity of biological phenomena is an argument for the use of mathematical methods rather than against it. In the case of a simple phenomenon we may hope to understand it without the use of mathematics, by simple inspection. But in a complex case we are left hopeless without mathematics.”
October 16, 2025 at 12:30 PM
Very cool, will try it out!! :)
October 13, 2025 at 10:20 AM
Lol 😆
October 9, 2025 at 11:37 AM
Awesome, congrats!!!
October 8, 2025 at 6:20 PM
(The first concept TopoTome version is now on biorxiv, linked below; stay tuned for the big guns - TopoTome v2)

www.biorxiv.org/content/10.1...
TopoTome: Topology-informed unsupervised segmentation and analysis of 3D images
Biological systems are three-dimensional and complex. Today, images of biological structures can be acquired using different imaging technologies and at increasing resolutions. However, identifying re...
www.biorxiv.org
October 6, 2025 at 9:06 PM
Reposted by Ana Marija Jakšić
The paper itself (with Henry Potter) is here: onlinelibrary.wiley.com/doi/10.1111/... (and is the European Journal of Neuroscience's most downloaded paper over the last two years! 😊)
Beyond Mechanism—Extending Our Concepts of Causation in Neuroscience
The search for neural mechanisms of behaviour often relies on a synchronic, driving view of causation, where neural activity drives more neural activity, which eventually drives behaviour. The real c...
onlinelibrary.wiley.com
September 22, 2025 at 6:43 PM
Excellent opinion paper, I really enjoyed reading it, especially since it very much resonates with how my lab has been thinking about the brain and mechanistic causes and emergence of individual behavior, resolved by time. Congratulations!
September 23, 2025 at 7:15 AM
Reposted by Ana Marija Jakšić
The larger problem is the textbooks frame things in a "X does Y" kind of way. It's very hard to get people to envision a dynamic, reverberant, reciprocally interconnected system and what that will mean for where signals of different types can be observed...I don't have a good answer for this...
September 5, 2025 at 3:41 PM
Good luck with this one, lol
a man in a red jacket eating popcorn with the words and here we go behind him
ALT: a man in a red jacket eating popcorn with the words and here we go behind him
media.tenor.com
August 28, 2025 at 6:59 PM
No, thank you! Stay strong, we’ll weather this hopefully short storm being a tight community that we are. 💪🏻
August 27, 2025 at 3:35 PM
I mean, generally the place was actually really great and there were many people vibing with what I proposed to get to interview, but that one conversation really stuck with me :p
August 19, 2025 at 10:52 AM
A (not exact) wording was: “you know, today in neuroscience if you can’t get to the neuron level, it will be very difficult to find a way to get it published“
August 19, 2025 at 10:18 AM