Manisha Barse
@mbarse.bsky.social
Data Science Research Assistant at LIBD https://manishabarse.github.io/
#bioinformatics #Rstats @libdrstats.bsky.social @lieberinstitute.bsky.social @Bioconductor.bsky.social/🧠 genomics @lcolladotor.bsky.social
#bioinformatics #Rstats @libdrstats.bsky.social @lieberinstitute.bsky.social @Bioconductor.bsky.social/🧠 genomics @lcolladotor.bsky.social
This paper reviews the latest computational approaches for cell-type deconvolution in spatial transcriptomics, comparing tools and data integration.
🔗 doi.org/10.1038/s415...
Thanks 🙌
@lgaspardboulinc.bsky.social, Luca Gortana, @thomas-walter.bsky.social, Emmanuel Barillot & Florence Cavalli
🔗 doi.org/10.1038/s415...
Thanks 🙌
@lgaspardboulinc.bsky.social, Luca Gortana, @thomas-walter.bsky.social, Emmanuel Barillot & Florence Cavalli
Cell-type deconvolution methods for spatial transcriptomics - Nature Reviews Genetics
Cell-type deconvolution methods are often needed to analyse spatial transcriptomic data to recover cell-type distributions. In this Review, the authors describe the process of cell-type deconvolution,...
doi.org
September 2, 2025 at 9:07 PM
This paper reviews the latest computational approaches for cell-type deconvolution in spatial transcriptomics, comparing tools and data integration.
🔗 doi.org/10.1038/s415...
Thanks 🙌
@lgaspardboulinc.bsky.social, Luca Gortana, @thomas-walter.bsky.social, Emmanuel Barillot & Florence Cavalli
🔗 doi.org/10.1038/s415...
Thanks 🙌
@lgaspardboulinc.bsky.social, Luca Gortana, @thomas-walter.bsky.social, Emmanuel Barillot & Florence Cavalli
Here’s the DOI for the paper discussed in this journal club session: doi.org/10.1101/2024...
Accurate sample deconvolution of pooled snRNA-seq using sex-dependent gene expression patterns
Single-nucleus RNA sequencing (snRNA-seq) technology offers unprecedented resolution for studying cell type-specific gene expression patterns. However, snRNA-seq poses high costs and technical limitat...
doi.org
May 23, 2025 at 6:33 PM
Here’s the DOI for the paper discussed in this journal club session: doi.org/10.1101/2024...