Matt White
@mattehw.bsky.social
(Yes like the paint)
PhD student in chemical proteomics, one error message at a time
Also @ehwmatt@mstdn.science
He/him
PhD student in chemical proteomics, one error message at a time
Also @ehwmatt@mstdn.science
He/him
These plots are super interesting and informative, I'm keen to overlay some of my own data in this style. Are the respective PSM ID numbers for each PTM site from GPMDB available to download in bulk or programatically? I had a look at the documentation but couldn't work it out. Cheers!
October 27, 2025 at 7:45 PM
These plots are super interesting and informative, I'm keen to overlay some of my own data in this style. Are the respective PSM ID numbers for each PTM site from GPMDB available to download in bulk or programatically? I had a look at the documentation but couldn't work it out. Cheers!
We asked our application specialist in the UK but no response yet - will update if we hear anything!
November 2, 2023 at 3:53 PM
We asked our application specialist in the UK but no response yet - will update if we hear anything!
Not sure about do's and dont's but this is a good overview of widely used approaches and their pros/cons: www.nature.com/articles/s41... Doesn't get so much into the hands on details but I guess that depends more on what kind of workflows you are doing :)
October 30, 2023 at 3:21 PM
Not sure about do's and dont's but this is a good overview of widely used approaches and their pros/cons: www.nature.com/articles/s41... Doesn't get so much into the hands on details but I guess that depends more on what kind of workflows you are doing :)
Would be very interested to hear your thoughts on the effect (or implications for compound screening/target ID) of chemoproteomic-type enrichments on quant. Has anyone looked at LLOD/LLOQ/dynamic range when spiking in known ratios pre- and post-enrichment?
October 19, 2023 at 7:08 PM
Would be very interested to hear your thoughts on the effect (or implications for compound screening/target ID) of chemoproteomic-type enrichments on quant. Has anyone looked at LLOD/LLOQ/dynamic range when spiking in known ratios pre- and post-enrichment?