Rasmus Marvig
@marvig.bsky.social
Computational biologist specialising in infectious disease genomics
Yep.
The test command/dataset works now. So I am one step further :)
I have created an issue: github.com/interpretAMR...
Thanks and sure that I will work for me and be a success for many.
The test command/dataset works now. So I am one step further :)
I have created an issue: github.com/interpretAMR...
Thanks and sure that I will work for me and be a success for many.
I get "0 hits matched a rule " both when I tried on AMRrules/tests/data/input/test_ecoli_genome.tsv and 100 local P. aeruginosa genomes. · Issue #4 · interpretAMR/AMRrules
Dear authors of AMRrules, Thanks for a promising tool. I get "0 hits matched a rule " both when I tried on AMRrules/tests/data/input/test_ecoli_genome.tsv and 100 local P. aeruginosa genomes. So I ...
github.com
May 26, 2025 at 6:43 PM
Yep.
The test command/dataset works now. So I am one step further :)
I have created an issue: github.com/interpretAMR...
Thanks and sure that I will work for me and be a success for many.
The test command/dataset works now. So I am one step further :)
I have created an issue: github.com/interpretAMR...
Thanks and sure that I will work for me and be a success for many.
Thanks for reply.
My old files were generated without --print_node option so I generated new files.
I tried on 100 P. aeruginosa and gets "0 hits matched a rule" for all. Same for test_ecoli_genome.tsv so it must be problem at my end. I may create an issue at github to get onwards from here.
My old files were generated without --print_node option so I generated new files.
I tried on 100 P. aeruginosa and gets "0 hits matched a rule" for all. Same for test_ecoli_genome.tsv so it must be problem at my end. I may create an issue at github to get onwards from here.
May 26, 2025 at 7:42 AM
Thanks for reply.
My old files were generated without --print_node option so I generated new files.
I tried on 100 P. aeruginosa and gets "0 hits matched a rule" for all. Same for test_ecoli_genome.tsv so it must be problem at my end. I may create an issue at github to get onwards from here.
My old files were generated without --print_node option so I generated new files.
I tried on 100 P. aeruginosa and gets "0 hits matched a rule" for all. Same for test_ecoli_genome.tsv so it must be problem at my end. I may create an issue at github to get onwards from here.
Great work.
Does it take amrfinderplus v3 results as input or only newest armfinderplus v4 ?
Does it take amrfinderplus v3 results as input or only newest armfinderplus v4 ?
May 22, 2025 at 9:23 PM
Great work.
Does it take amrfinderplus v3 results as input or only newest armfinderplus v4 ?
Does it take amrfinderplus v3 results as input or only newest armfinderplus v4 ?