Martin Hölzer
@martinhoelzer.bsky.social
Bioinformatics and translational research. Team lead at the Genome Competence Center at RKI, Berlin, Germany.
https://hoelzer.github.io
https://hoelzer.github.io
📢 New paper: Targeted decontamination of sequencing data with CLEAN
We introduce CLEAN, a reproducible pipeline for removing spike-ins, host DNA, and rRNA from short & long sequences.
💡 Fast, reproducible, scalable.
Read the paper: doi.org/10.1093/narg...
Code & docs: github.com/rki-mf1/clean
We introduce CLEAN, a reproducible pipeline for removing spike-ins, host DNA, and rRNA from short & long sequences.
💡 Fast, reproducible, scalable.
Read the paper: doi.org/10.1093/narg...
Code & docs: github.com/rki-mf1/clean
August 4, 2025 at 7:02 AM
📢 New paper: Targeted decontamination of sequencing data with CLEAN
We introduce CLEAN, a reproducible pipeline for removing spike-ins, host DNA, and rRNA from short & long sequences.
💡 Fast, reproducible, scalable.
Read the paper: doi.org/10.1093/narg...
Code & docs: github.com/rki-mf1/clean
We introduce CLEAN, a reproducible pipeline for removing spike-ins, host DNA, and rRNA from short & long sequences.
💡 Fast, reproducible, scalable.
Read the paper: doi.org/10.1093/narg...
Code & docs: github.com/rki-mf1/clean
🚀 We've updated RNAflow – our pipeline for differential gene expression analysis – to include the latest SortMeRNA for improved rRNA removal!
This also resolves recent bugs reported by users.
🔬 Looking for a reproducible & comprehensive transcriptome analysis pipeline?
👉 github.com/hoelzer-lab/...
This also resolves recent bugs reported by users.
🔬 Looking for a reproducible & comprehensive transcriptome analysis pipeline?
👉 github.com/hoelzer-lab/...
July 3, 2025 at 5:21 AM
🚀 We've updated RNAflow – our pipeline for differential gene expression analysis – to include the latest SortMeRNA for improved rRNA removal!
This also resolves recent bugs reported by users.
🔬 Looking for a reproducible & comprehensive transcriptome analysis pipeline?
👉 github.com/hoelzer-lab/...
This also resolves recent bugs reported by users.
🔬 Looking for a reproducible & comprehensive transcriptome analysis pipeline?
👉 github.com/hoelzer-lab/...