Marius Pachitariu
marius10p.bsky.social
Marius Pachitariu
@marius10p.bsky.social
Lab head @HHMIJanelia
neuroscience, deep learning, large-scale recordings
#Kilosort, #Suite2p, #Cellpose, #Rastermap, #Facemap
Yes! More generally for affective and/or very salient outcomes, everything could be different. We only measured visual cortex in benign "daily life" scenarios.
September 22, 2025 at 8:08 PM
Another way to think of it is novel items/situations versus novel temporal order of familiar items. However, it could be different in non-sensory brain areas, or in other species, or in other modalities.
September 22, 2025 at 8:04 PM
TetO‐jGCaMP8s is a drop in replacement for the @crisniell.bsky.social mice with all the nice properties of 8s. High, dense expression, and doesn't have the aberrant activity. Was used here: www.nature.com/articles/s41...
July 16, 2025 at 3:49 AM
Ok, yes, this one will be tough no matter what. It might work a little better if there was more context, for example if the FOV was larger.
May 9, 2025 at 11:47 AM
Could you share an image please?
May 8, 2025 at 3:50 PM
I don't think we have good examples to look at this, but you can test it directly on the website or in the GUI and let us know.
May 4, 2025 at 10:32 PM
Cellpose-SAM is currently available in the GUI.
May 4, 2025 at 2:47 PM
The Cellpose-SAM backbone, yes. The SAM encoder weights were re-trained on a lot of cellular data to predict the Cellpose flows.
May 4, 2025 at 12:34 PM