Luke E Holman
@lukeeholman.bsky.social
PostDoc at the Globe Institute, Copenhagen | #biodiversity | #invasions | #eDNA | #OceanOptimist | 🏔️ 🌊 ☕️ 👨💻 📈
Thank you so much for your beautiful art. You really captured how humanity has challenged the oceans, while also providing hope for future flourishing seas through recovery and restoration.
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July 17, 2025 at 8:12 AM
Thank you so much for your beautiful art. You really captured how humanity has challenged the oceans, while also providing hope for future flourishing seas through recovery and restoration.
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Thank you to all the amazing authors who trusted us with their research. Not to mention our wonderful artists Jacek Matysiak (www.instagram.com/big.hippo.art/) and Maddy Dall (www.instagram.com/maddydall/) who brought the issue to life with their beautiful illustrations.
July 10, 2025 at 10:02 AM
Thank you to all the amazing authors who trusted us with their research. Not to mention our wonderful artists Jacek Matysiak (www.instagram.com/big.hippo.art/) and Maddy Dall (www.instagram.com/maddydall/) who brought the issue to life with their beautiful illustrations.
Contributions use bones 🦴, shells 🐚, old catch records 📜, logbooks 📖, marine sediments 🧪 & more to reach before monitoring began. Using stable isotopes 🧬, ancient DNA 🧫, ecosystem models 🌍 & other tools, they reveal fresh insights into our impact on the seas 🌊.
July 10, 2025 at 10:02 AM
Contributions use bones 🦴, shells 🐚, old catch records 📜, logbooks 📖, marine sediments 🧪 & more to reach before monitoring began. Using stable isotopes 🧬, ancient DNA 🧫, ecosystem models 🌍 & other tools, they reveal fresh insights into our impact on the seas 🌊.
My amazing co-guest editors @ruththurstan.bsky.social @kbohmann.bsky.social @mikkelwp.bsky.social @tangeolsen.bsky.social & non-Bskyers Ol Craig, David Orton, James Scourse and I found only enthusiasm and interest from our networks - the amazing research rolled in!
July 10, 2025 at 10:02 AM
My amazing co-guest editors @ruththurstan.bsky.social @kbohmann.bsky.social @mikkelwp.bsky.social @tangeolsen.bsky.social & non-Bskyers Ol Craig, David Orton, James Scourse and I found only enthusiasm and interest from our networks - the amazing research rolled in!
There wasn’t an obvious place to bring together data from archaeology 🏺, ecology 🌿, and marine geology 🌊…
Then I saw a call from @royalsocietypublishing.org 📣 for theme issues — and suddenly, everything clicked! 💡🧩
Then I saw a call from @royalsocietypublishing.org 📣 for theme issues — and suddenly, everything clicked! 💡🧩
July 10, 2025 at 10:02 AM
There wasn’t an obvious place to bring together data from archaeology 🏺, ecology 🌿, and marine geology 🌊…
Then I saw a call from @royalsocietypublishing.org 📣 for theme issues — and suddenly, everything clicked! 💡🧩
Then I saw a call from @royalsocietypublishing.org 📣 for theme issues — and suddenly, everything clicked! 💡🧩
A couple of years ago we were beginning to see exciting interdisciplinary datasets coming out of @erc.europa.eu 🌍 @seachange-erc.bsky.social 🌊. It was amazing to begin to understand the complex dance of climate 🌡️, humans 🧍♂️🧍♀️, and marine biodiversity 🐟🪸 across centuries! ⏳✨
July 10, 2025 at 10:02 AM
A couple of years ago we were beginning to see exciting interdisciplinary datasets coming out of @erc.europa.eu 🌍 @seachange-erc.bsky.social 🌊. It was amazing to begin to understand the complex dance of climate 🌡️, humans 🧍♂️🧍♀️, and marine biodiversity 🐟🪸 across centuries! ⏳✨
🙌 Thanks to amazing co-authors @kbohmann.bsky.social sky.social, @mikkelwp.bsky.social @seachange-erc.bsky.social, many others not on 💙☁️, & our funders @erc.europa.eu.
Dive into the full study here: doi.org/10.1111/1755...
Lots more detail in the supplements!
Dive into the full study here: doi.org/10.1111/1755...
Lots more detail in the supplements!
Navigating Past Oceans: Comparing Metabarcoding and Metagenomics of Marine Ancient Sediment Environmental DNA
The condition of ancient marine ecosystems provides context for contemporary biodiversity changes in human-impacted oceans. Sequencing sedimentary ancient DNA (sedaDNA) is an emerging method for gene...
doi.org
February 21, 2025 at 8:59 AM
🙌 Thanks to amazing co-authors @kbohmann.bsky.social sky.social, @mikkelwp.bsky.social @seachange-erc.bsky.social, many others not on 💙☁️, & our funders @erc.europa.eu.
Dive into the full study here: doi.org/10.1111/1755...
Lots more detail in the supplements!
Dive into the full study here: doi.org/10.1111/1755...
Lots more detail in the supplements!
💡 Some takeaways:
Different eDNA methods give us different snapshots of ancient biodiversity. Interpret ancient records with care —methodological biases can shape ecological conclusions.
When your material crosses 2-4k years BP be careful interpreting alpha diversity changes.📝
Different eDNA methods give us different snapshots of ancient biodiversity. Interpret ancient records with care —methodological biases can shape ecological conclusions.
When your material crosses 2-4k years BP be careful interpreting alpha diversity changes.📝
February 21, 2025 at 8:59 AM
💡 Some takeaways:
Different eDNA methods give us different snapshots of ancient biodiversity. Interpret ancient records with care —methodological biases can shape ecological conclusions.
When your material crosses 2-4k years BP be careful interpreting alpha diversity changes.📝
Different eDNA methods give us different snapshots of ancient biodiversity. Interpret ancient records with care —methodological biases can shape ecological conclusions.
When your material crosses 2-4k years BP be careful interpreting alpha diversity changes.📝
📊 Consistent beta diversity
Despite the richness differences, both methods produced similar beta diversity patterns, highlighting consistent shifts in community composition over time.
Phew!
Despite the richness differences, both methods produced similar beta diversity patterns, highlighting consistent shifts in community composition over time.
Phew!
February 21, 2025 at 8:59 AM
📊 Consistent beta diversity
Despite the richness differences, both methods produced similar beta diversity patterns, highlighting consistent shifts in community composition over time.
Phew!
Despite the richness differences, both methods produced similar beta diversity patterns, highlighting consistent shifts in community composition over time.
Phew!
📉 Very different richness across methods!📉
Our results showed opposing alpha diversity trends:
• Metabarcoding = lower ASV richness in older sediments
• Metagenomics = lower genus richness in younger sediments
A clear reminder that the method truly matters! 🎯
Our results showed opposing alpha diversity trends:
• Metabarcoding = lower ASV richness in older sediments
• Metagenomics = lower genus richness in younger sediments
A clear reminder that the method truly matters! 🎯
February 21, 2025 at 8:59 AM
📉 Very different richness across methods!📉
Our results showed opposing alpha diversity trends:
• Metabarcoding = lower ASV richness in older sediments
• Metagenomics = lower genus richness in younger sediments
A clear reminder that the method truly matters! 🎯
Our results showed opposing alpha diversity trends:
• Metabarcoding = lower ASV richness in older sediments
• Metagenomics = lower genus richness in younger sediments
A clear reminder that the method truly matters! 🎯
🔍 What taxa overlapped? 🔍
We found that only 3 metazoan genera overlapped between methods:
• Oikopleura (larvacean)
• Gadus (cod)
• Clupea (herring)
(+ 🌿seagrass🌿)
Interestingly we found that only metagenomics provided reliable detections beyond 4k years for all taxa.
We found that only 3 metazoan genera overlapped between methods:
• Oikopleura (larvacean)
• Gadus (cod)
• Clupea (herring)
(+ 🌿seagrass🌿)
Interestingly we found that only metagenomics provided reliable detections beyond 4k years for all taxa.
February 21, 2025 at 8:59 AM
🔍 What taxa overlapped? 🔍
We found that only 3 metazoan genera overlapped between methods:
• Oikopleura (larvacean)
• Gadus (cod)
• Clupea (herring)
(+ 🌿seagrass🌿)
Interestingly we found that only metagenomics provided reliable detections beyond 4k years for all taxa.
We found that only 3 metazoan genera overlapped between methods:
• Oikopleura (larvacean)
• Gadus (cod)
• Clupea (herring)
(+ 🌿seagrass🌿)
Interestingly we found that only metagenomics provided reliable detections beyond 4k years for all taxa.
🔬 What did we do?🔬
We sampled a long (30m+), old (20y+) marine sediment core from the Skagerrak, North Sea, performing 18S(v9) metabarcoding and shotgun-metagenomic sequencing to see what these very different techniques tell us about ancient oceans.
We sampled a long (30m+), old (20y+) marine sediment core from the Skagerrak, North Sea, performing 18S(v9) metabarcoding and shotgun-metagenomic sequencing to see what these very different techniques tell us about ancient oceans.
February 21, 2025 at 8:59 AM
🔬 What did we do?🔬
We sampled a long (30m+), old (20y+) marine sediment core from the Skagerrak, North Sea, performing 18S(v9) metabarcoding and shotgun-metagenomic sequencing to see what these very different techniques tell us about ancient oceans.
We sampled a long (30m+), old (20y+) marine sediment core from the Skagerrak, North Sea, performing 18S(v9) metabarcoding and shotgun-metagenomic sequencing to see what these very different techniques tell us about ancient oceans.
We have so much more to do to support women in STEM! 👩🔬 Here at GLOBE, across Danish academia🇩🇰, and around the 🌍
🚀 Follow these great women, read & cite their work, and stay aware of the biases that can make us miss out on talented researchers & amazing collaborators! 💙 #WomenInSTEM #EquityInScience
🚀 Follow these great women, read & cite their work, and stay aware of the biases that can make us miss out on talented researchers & amazing collaborators! 💙 #WomenInSTEM #EquityInScience
February 11, 2025 at 4:39 PM
We have so much more to do to support women in STEM! 👩🔬 Here at GLOBE, across Danish academia🇩🇰, and around the 🌍
🚀 Follow these great women, read & cite their work, and stay aware of the biases that can make us miss out on talented researchers & amazing collaborators! 💙 #WomenInSTEM #EquityInScience
🚀 Follow these great women, read & cite their work, and stay aware of the biases that can make us miss out on talented researchers & amazing collaborators! 💙 #WomenInSTEM #EquityInScience
Finally, the super talented Lene Bruhn Pedersen! 🧪✨ Her lab skills are crucial to keeping our projects running. 🔬💡
Lene is looking for new opportunities in Copenhagen as our project wraps up. If you need the best lab tech in town, reach out! 👀📢
🔗 More about Lene: seachange-erc.eu/people/lene_...
Lene is looking for new opportunities in Copenhagen as our project wraps up. If you need the best lab tech in town, reach out! 👀📢
🔗 More about Lene: seachange-erc.eu/people/lene_...
People - Seachange
seachange-erc.eu
February 11, 2025 at 4:39 PM
Finally, the super talented Lene Bruhn Pedersen! 🧪✨ Her lab skills are crucial to keeping our projects running. 🔬💡
Lene is looking for new opportunities in Copenhagen as our project wraps up. If you need the best lab tech in town, reach out! 👀📢
🔗 More about Lene: seachange-erc.eu/people/lene_...
Lene is looking for new opportunities in Copenhagen as our project wraps up. If you need the best lab tech in town, reach out! 👀📢
🔗 More about Lene: seachange-erc.eu/people/lene_...