Lily Peck
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lilypeck.bsky.social
Lily Peck
@lilypeck.bsky.social
Evolutionary biologist in climate change and natural populations of 🌱 🌳 🍄 | Postdoc at UCLA 🌞 | formerly Imperial College London Grantham Institute & Life Sciences ☔️ | she/ her

genomes | transcriptomes | methylomes are my cuppa ☕️
A huge amount of work went into this paper by myself and all the co-authors, and thanks to CABI, @imperiallifesci.bsky.social and @ox.ac.uk for the press releases:
www.imperial.ac.uk/news/258997/...

www.biology.ox.ac.uk/article/outb...
Coffee wilt disease evolves new genetic weapons to target crops | Imperial News | Imperial College London
Scientists reveal how coffee wilt fungi gained genes to better infect arabica and robusta crops.
www.imperial.ac.uk
December 11, 2024 at 1:11 AM
And fungal geneticists favourite buzzword: an 80kb Starship mobile element has inserted between highly expressed genes in the Fusarium xylarioides population which infects the people's favourite arabica coffee ☕
December 11, 2024 at 1:10 AM
Horizontally transferred regions contain highly-expressed genes following infection of coffee plants, including 'secreted in xylem' effector genes from Fusarium oxysporum. Specific transposons are also shared between Fusarium xylarioides and F. oxysporum.
December 11, 2024 at 1:09 AM
We found five large horizontal transfers which are differentially present across the populations. Several of these show close matches to mobile pathogenic chromosomes from Fusarium oxysporum.
December 11, 2024 at 1:09 AM
Now to dive into the details...

We published the first nearly-chromosomal reference genome for Fusarium xylarioides, the coffee wilt pathogen, and found multiple genetically differentiated populations within a species complex
December 11, 2024 at 1:09 AM
If you don't want the directors cut, an excellent primer also published in @plosbiology.org explains in common language our key findings, and why they matter: journals.plos.org/plosbiology/...
Gene transfer between fungal species triggers repeated coffee wilt disease outbreaks
Two outbreaks of coffee wilt disease have devastated African coffee production. A PLOS Biology study suggests that horizontal gene transfer via Starships between two fungal strains played a key role i...
journals.plos.org
December 11, 2024 at 1:08 AM
[as you can probably tell] it is a very new account!
December 11, 2024 at 12:32 AM