Leif S. Ludwig
leifludwig.bsky.social
Leif S. Ludwig
@leifludwig.bsky.social
Emmy Noether Research Group leader at Berlin Institute of Health at Charité and Berlin Institute for Medical Systems Biology (MDC)
🙏 Thanks to @caleblareau.bsky.social l, @hattaca.bsky.social, @helenaradbruch.bsky.social ky.social, Benedikt Obermayer, Marie Cotta, Frank Hepper, David Capper, Wolfram Kunz, Markus Schülke & all team members for their contributions!
September 24, 2025 at 12:39 PM
Together, scmtMPM & scwMSS provide a quantitative framework for somatic mtDNA mosaicism, advancing mitochondrial genetics & disease research.
September 24, 2025 at 12:39 PM
Using POLG-mutant cells, healthy donors & patients, we show:
🔹 Complex single-cell mutational landscapes
🔹 Negative selection against truncating & pathogenic variants

🔹 Constrained mutations in Complex I
September 24, 2025 at 12:39 PM
🔥 Our second preprint, led by Josch, introduces a new framework to measure mtDNA mutational burden & constraint at single-cell resolution.
We present:
🔹 scmtMPM (mutations per Mb)
🔹 scwMSS (heteroplasmy-weighted local constraint)
👉 www.researchsquare.com/article/rs-6...
Single-cell multi-omics resolved analysis of mitochondrial genome-wide mutational burden, constraint, and mosaicism
Mitochondria contain their own circular, multi-copy genome, encoding essential components of the mitochondrial respiratory chain vital for cellular metabolism. Mitochondrial DNA (mtDNA) mutations occu...
www.researchsquare.com
September 24, 2025 at 12:39 PM
In short: Cryo-mtscATAC-seq enables cell state–informed clonality from frozen specimens, opening new avenues to leverage biobanked tissue in health & disease.
September 24, 2025 at 12:39 PM
Cryo-mtscATAC-seq + our mitoBender computational tool:
🔹 Works on archival frozen tissue
🔹 Extends mtDNA genotyping to brain, glioblastoma, neuroblastoma & vascular tissue
🔹 Reveals clonal gliogenesis, microglial expansions, chemo-induced heterogeneity & smooth muscle oligoclonality
September 24, 2025 at 12:39 PM