Larry M. York
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larrymyork.phenotyper.com
Larry M. York
@larrymyork.phenotyper.com
Scientist at Oak Ridge National Laboratory. Autonomous discovery, roots, plants, soil, and phenomics. My opinions. Life is a garden.

www.phenotyper.com
Great idea! I'm in a different field but do image analysis. Zenodo.org is a good fit. Give every image a unique file name. Make a csv file where each row has the file name and columns for species, collection site, other info, then columns for the measurements. Separate file that defines columns.
September 28, 2025 at 11:08 AM
I was asked to give that last minute. Thanks for staying!

www.rhizovision.com is still kicking, new version coming out soon.
RhizoVision Explorer
Get ready for RhizoVision - see roots like never before
www.rhizovision.com
August 30, 2025 at 1:54 AM
How did this go? We have a new Linux version of RhizoVision with a command line mode to call from Python scripts. Let me know if you think it'd be useful for your pipeline, hopefully we can share a beta version soon
August 28, 2025 at 1:04 AM
Reposted by Larry M. York
Advanced software, RhizoVision Explorer, analysed these images to extract detailed root architecture traits. The team also conducted genetic analysis using DarTSeq technology to identify DNA markers associated with root responses to phosphorus availability.
September 20, 2024 at 11:30 AM
Do you have any information about the new model?

I share my protocols as PDFs on zenodo.org which provides a DOI and the ability to track views and downloads.

See phenotyper.com/datasets for examples
August 5, 2025 at 2:55 PM
I am concerned about that too.
July 8, 2025 at 7:36 PM
Ha, well my memory is not as good. I've become really fascinated by agentic AI and how to use chatbots effectively. A single LLM is not enough but as we start bolting together many models, something profound is going to happen.

I miss the lack of discussion on human consciousness though.
July 8, 2025 at 6:45 PM
Reminds me of the famous saying, "All art is plagiarism."

I sympathize but I also wonder what we really know about human creativity and thought. What exactly is different?
July 8, 2025 at 4:10 PM
I remember seeing the terracotta soldiers there!
April 27, 2025 at 3:08 AM
Thanks Amit, interesting work
March 2, 2025 at 4:28 AM
It's awesome! I've been watching your and other xray microscopy work for awhile but I wanted it for high throughout applications. Is it still a long scan time for something like root anatomy?
February 2, 2025 at 2:48 AM
So for how many years did we miss updates on their incremental work?
February 2, 2025 at 2:27 AM
Are the streaks of thin lines the hyphae?!
February 1, 2025 at 10:37 PM