Kari Lavikka
karilavikka.fi
Kari Lavikka
@karilavikka.fi
Researcher working on bioinformatics, WebGL-powered cancer genome visualization, and tumor evolution.
Selections can also drive filtering and aggregation, though the code is still entirely CPU-based for now. I’d like to explore columnar and GPU-based approaches in the future. (2/2)
June 17, 2025 at 4:43 PM
It’s been a bit quiet on the GenomeSpy front, but I finally had time to implement interval selections and other fancy features. Vega-Lite–style conditional encodings are compiled into shader code, with selection tests running on the GPU—making interactions snappy. (1/2)
June 17, 2025 at 4:43 PM
Metastases in solid tumors consist of heterogeneous subclonal mixtures that evolve across space and time. Jellyfish integrates tumor phylogeny and subclonal compositions of spatiotemporal samples into a unified plot, making subclonal dynamics easier to interpret. #CancerResearch (2/7)
February 26, 2025 at 1:52 PM