Julie Fabre
@juliefabre.bsky.social
Postdoc in Ilana Witten's lab. Former PhD student in Kenneth Harris and Matteo Carandini's lab. Follow for updates on bombcell and other Neuropixels software.
https://github.com/Julie-Fabre
https://github.com/Julie-Fabre
📈 How well does it work?
Preliminary data shows bombcell correctly labels white matter units, agrees with manual curation, and it is already in use in an estimated 30+ labs
Preliminary data shows bombcell correctly labels white matter units, agrees with manual curation, and it is already in use in an estimated 30+ labs
June 13, 2025 at 7:19 PM
📈 How well does it work?
Preliminary data shows bombcell correctly labels white matter units, agrees with manual curation, and it is already in use in an estimated 30+ labs
Preliminary data shows bombcell correctly labels white matter units, agrees with manual curation, and it is already in use in an estimated 30+ labs
Users can now also manually label a subset of units in the GUI, and bombcell will automatically suggest the optimal parameter thresholds for your dataset.
June 13, 2025 at 7:13 PM
Users can now also manually label a subset of units in the GUI, and bombcell will automatically suggest the optimal parameter thresholds for your dataset.
📊 Key feature
An important part of bombcell is the ability to quickly look at your data and quality metrics, using summary plots and an interactive GUI. Visual feedback makes it simple to fine-tune parameters for your specific needs.
An important part of bombcell is the ability to quickly look at your data and quality metrics, using summary plots and an interactive GUI. Visual feedback makes it simple to fine-tune parameters for your specific needs.
June 13, 2025 at 7:09 PM
📊 Key feature
An important part of bombcell is the ability to quickly look at your data and quality metrics, using summary plots and an interactive GUI. Visual feedback makes it simple to fine-tune parameters for your specific needs.
An important part of bombcell is the ability to quickly look at your data and quality metrics, using summary plots and an interactive GUI. Visual feedback makes it simple to fine-tune parameters for your specific needs.
🔧 How does it work?
bombcell uses a comprehensive set of quality metrics (waveform shape, ISI violations, drift, amplitude, spatial spread, refractory period violations, etc.) with tunable thresholds to automatically classify your units as good, MUA, noise or non-somatic.
bombcell uses a comprehensive set of quality metrics (waveform shape, ISI violations, drift, amplitude, spatial spread, refractory period violations, etc.) with tunable thresholds to automatically classify your units as good, MUA, noise or non-somatic.
June 13, 2025 at 7:00 PM
🔧 How does it work?
bombcell uses a comprehensive set of quality metrics (waveform shape, ISI violations, drift, amplitude, spatial spread, refractory period violations, etc.) with tunable thresholds to automatically classify your units as good, MUA, noise or non-somatic.
bombcell uses a comprehensive set of quality metrics (waveform shape, ISI violations, drift, amplitude, spatial spread, refractory period violations, etc.) with tunable thresholds to automatically classify your units as good, MUA, noise or non-somatic.