John Quackenbush
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johnquackenbush.bsky.social
John Quackenbush
@johnquackenbush.bsky.social
Father, husband, scientist, professor, department chair, martial artist, scuba diver (in about that order).
The system has been corrupted so that research will no longer serve the needs of the people but instead will be used to advance the will of the state. We have surrendered 80 years of world leadership in biomedical research because of the small-mindedness of the Project 2025 authors and its enablers.
August 27, 2025 at 2:46 PM
The executive order adding a layer of Soviet-style political review before final grant approval means that even good science could be killed by some bureaucrat who has no idea what the science means but sets standards based on political dogma.
August 27, 2025 at 2:46 PM
What its supporters call "the big, beautiful bill" includes a 40% cut in the NIH budget and a vast restructuring of the institutes. The announced changes in funding structure likely will mean that instead of 1/10 grant applications being funded, 1/25 will be--and maybe worse when combined with cuts.
August 27, 2025 at 2:46 PM
Don't mention mRNA vaccines as a way of treating infectious disease or for individualized cancer therapy. That is dead too. Training grants for PhD students have not been funded since inauguration day. Grant funding rates have been about 60% of previous years with the fiscal year running out.
August 27, 2025 at 2:46 PM
Other programs have been axed because they rewarded expertise in the field--such as NCI's R35 Outstanding Investigator program, whose grantees read like a "Who's Who" of luminaries in the field. Vaccine research and clinical trials programs are gone.
August 27, 2025 at 2:46 PM
The situation with science and the universities is so dire that the best path forward is unclear. Entire programs have been terminated by word search because they addressed questions involving equity or gender--as if some members of the population do not deserve their health issues addressed.
August 27, 2025 at 2:46 PM
What pains me as a person is that my family has to think about a trip to Canada for a vaccine that used to be available, with a certificate for $20 of free groceries, a six-minute drive from our house.

What pains me as a scientist is the devastation of our nation's intellectual capital and future.
August 26, 2025 at 3:34 PM
Put it in a Jupyter Notebook/R Markdown Document so that the analysis can be run from start to finish and reproduce all of the figures in the paper. In the process, make sure the code is documented so that each step is explained and each variable is defined.
August 26, 2025 at 2:01 AM
Wish I could be there to celebrate with you. This is a great piece of work.
August 19, 2025 at 4:39 PM
They are attacking Harvard and using anti-antisemitism as a pretense. But they are also trying to eliminate expertise and any long-term investment in science. There is no logic other than breaking things because they can. It's like a high school bully who attacks smart kids because we threaten him.
May 14, 2025 at 3:49 PM
@baym.lol, so sorry to hear this. I had an NCI R35, submitted my competitive renewal (more than 40 papers and a slew of new methods- with one NCI called one of 2024's most significant advances). I got a good score and was hopeful. Pre-council, I got an e-mail saying NCI was terminating the program.
May 14, 2025 at 3:49 PM
If my institution has DEIA policies, so we recruit highly qualified personnel from a range of backgrounds, treat them equitably, create an environment where certain members aren't excluded, and comply with the Americans with Disabilities Act, we can't work to cure disease. Please, someone, explain.
April 21, 2025 at 8:29 PM
And now the funds supporting this work are at risk. We've already been told that one funding program has been discontinued and that the grant application won't be reassigned. The project is dead with no attention to the actual work to be done.
April 17, 2025 at 7:22 PM
My own work sheds light on how diseases such as cancer and emphysema develop, progress, and respond to treatment-and why these differ between the sexes. This isn't "woke science." It addresses real problems and points to better treatments for everyone. We deliver new methods in open-source software.
April 17, 2025 at 4:29 PM
A federal research grant is not a gift, but a contract in which the grantee has to complete the work for which they were funded. Receiving a grant comes through a competitive process, and the terms of those contracts are not arbitrary. Harvard doesn't get free money. Grants are hard-won.
April 15, 2025 at 5:11 PM
December 20, 2024 at 8:07 PM