joe dobbs
@joedobbs.bsky.social
structural cell biologist @EMBL 🇨🇦
I was also going to point out it being a bit slow, but was waiting to see my job complete first! Thanks for figuring it out. I also noticed that the tutorial config.yaml may have the wrong names for fields e.g. "tomo1" needs to be "tomo1_files" for it to run
October 27, 2025 at 10:53 AM
I was also going to point out it being a bit slow, but was waiting to see my job complete first! Thanks for figuring it out. I also noticed that the tutorial config.yaml may have the wrong names for fields e.g. "tomo1" needs to be "tomo1_files" for it to run
Thanks! According to their stats page (www.ebi.ac.uk/emdb/statist...) I should be at around 37% right now, but we'll have to see how the rest of the year goes! 📈
Electron Microscopy Data Bank
www.ebi.ac.uk
October 15, 2025 at 5:56 PM
Thanks! According to their stats page (www.ebi.ac.uk/emdb/statist...) I should be at around 37% right now, but we'll have to see how the rest of the year goes! 📈
Thanks! I didn't see h44 repositioning despite directly looking for it. Could be the P-tRNA, but I also suspect IF3 might be involved in clamping it down in some way (>90% of 30S had IF3).
October 15, 2025 at 2:31 PM
Thanks! I didn't see h44 repositioning despite directly looking for it. Could be the P-tRNA, but I also suspect IF3 might be involved in clamping it down in some way (>90% of 30S had IF3).
Thanks! Although my wrists might disagree :)
October 15, 2025 at 2:15 PM
Thanks! Although my wrists might disagree :)
Sadly not :( I got most of the model IDs sequential, but the maps were a different story
October 15, 2025 at 11:59 AM
Sadly not :( I got most of the model IDs sequential, but the maps were a different story
Thanks! The dome is definitely intriguing, and happily I can point you to this nice recent preprint by my colleague @rasmusjensen.bsky.social about that exactly www.biorxiv.org/content/10.1...
In-cell discovery and characterization of a non-canonical bacterial protein translocation-folding complex
Cryo-electron tomography has emerged as powerful technology for in-cell structural biology, and in combination with breakthroughs in protein structure prediction, offers a unique opportunity for illum...
www.biorxiv.org
October 15, 2025 at 11:42 AM
Thanks! The dome is definitely intriguing, and happily I can point you to this nice recent preprint by my colleague @rasmusjensen.bsky.social about that exactly www.biorxiv.org/content/10.1...
Thanks!! Very true, and things are getting more and more doable- I think it'll be quite a different place in a few years.
October 15, 2025 at 7:03 AM
Thanks!! Very true, and things are getting more and more doable- I think it'll be quite a different place in a few years.