Jozef Nissimov
@jinoceanvir.bsky.social
Assistant Professor at the University of Waterloo. Head of the Environmental Virology and Ecology Research Group (ENVERG; www.enverg.ca). Into algae, viruses, environmental microbiology, oceanography. Views are my own.
(9/9) Overall this preprint and the discoveries in it blur the line between viral and cellular systems as never before, making it truly legitimate to ask the question: What is a virus?
October 3, 2025 at 2:37 PM
(9/9) Overall this preprint and the discoveries in it blur the line between viral and cellular systems as never before, making it truly legitimate to ask the question: What is a virus?
(8/9) This suggests that #selection has particularly favoured the acquisition of RP-coding genes in certain viruses, and that, in some cases, such viral genes have been transferred to cells, likely becoming essential for the survival of the host.
October 3, 2025 at 2:37 PM
(8/9) This suggests that #selection has particularly favoured the acquisition of RP-coding genes in certain viruses, and that, in some cases, such viral genes have been transferred to cells, likely becoming essential for the survival of the host.
(7/9) Interestingly, we find that these PhiMa05 #phage RPs are the only copies of those proteins that some Vampirovibrio strains possess.
October 3, 2025 at 2:37 PM
(7/9) Interestingly, we find that these PhiMa05 #phage RPs are the only copies of those proteins that some Vampirovibrio strains possess.
(6/9) We discover that these viral RP-coding genes were horizontally transferred to certain members of the Vampirovibrionia, an ancestral non-photosynthetic lineage of cyanobacteria, via the integration of the viral genome.
October 3, 2025 at 2:37 PM
(6/9) We discover that these viral RP-coding genes were horizontally transferred to certain members of the Vampirovibrionia, an ancestral non-photosynthetic lineage of cyanobacteria, via the integration of the viral genome.
(5/9) In this manuscript we dive into the #evolutionary trajectory of the RPs encoded by PhiMa05, elaborating on the ultimate causes and consequences of this fascinating set of viral proteins.
October 3, 2025 at 2:37 PM
(5/9) In this manuscript we dive into the #evolutionary trajectory of the RPs encoded by PhiMa05, elaborating on the ultimate causes and consequences of this fascinating set of viral proteins.
(4/9) This makes PhiMa05 the first cyanophage reported to encode RPs, as well as the virus with the most complete RP-coding set of the known #virosphere.
October 3, 2025 at 2:37 PM
(4/9) This makes PhiMa05 the first cyanophage reported to encode RPs, as well as the virus with the most complete RP-coding set of the known #virosphere.
(3/9) However, when they do, viruses usually harbor a single RP-coding gene. In this study, we revisit the genome of the jumbo #cyanophage PhiMa05 and show that it encodes six RPs (bS1, bL21, bL27, bL33, uL11and uL1), an RP acetyltransferase, and a ribosome biogenesis protein.
October 3, 2025 at 2:37 PM
(3/9) However, when they do, viruses usually harbor a single RP-coding gene. In this study, we revisit the genome of the jumbo #cyanophage PhiMa05 and show that it encodes six RPs (bS1, bL21, bL27, bL33, uL11and uL1), an RP acetyltransferase, and a ribosome biogenesis protein.
Great read. Looks like #viruses also code for some of these same GAF domains: www.sciencedirect.com/science/arti...
Cyanobacteriochrome-like GAF folds in phages revealed via AlphaFold proteomic modelling
Accurate protein structure prediction followed by structural homology detection enable the functional annotation of otherwise obscure viral protein-co…
www.sciencedirect.com
October 3, 2025 at 2:08 PM
Great read. Looks like #viruses also code for some of these same GAF domains: www.sciencedirect.com/science/arti...
Congratulations!
September 11, 2025 at 11:29 PM
Congratulations!
Sounds very interesting. Haven't read yet but I am surprised that the authors use the name E. huxleyi given that the taxonomy of this species has changed to Gephyrocapsa huxleyi
September 11, 2025 at 11:27 PM
Sounds very interesting. Haven't read yet but I am surprised that the authors use the name E. huxleyi given that the taxonomy of this species has changed to Gephyrocapsa huxleyi
Wow. Also beautiful TEM images!!!
July 25, 2025 at 9:00 AM
Wow. Also beautiful TEM images!!!