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jianshu0928.bsky.social
@jianshu0928.bsky.social
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jianshu0928.bsky.social
Our paper on very fast and scalable embedding： academic.oup.com/nargab/artic...
Approximate nearest neighbor graph provides fast and efficient embedding with applications for large-scale biological data
Abstract. Dimension reduction (DR or embedding) algorithms such as t-SNE and UMAP have many applications in big data visualization but remain slow for larg
academic.oup.com
April 19, 2025 at 5:15 PM
jianshu0928.bsky.social
First touch of the abundant population in OMZ via single-cell genomics.
academic.oup.com/ismej/advanc...
Promiscuous and genome-wide recombination underlies the sequence-discrete species of the SAR11 lineage in the deep ocean
Abstract. Surveys of microbial communities (metagenomics) or isolate genomes have revealed sequence-discrete species. That is, members of the same species
academic.oup.com
April 18, 2025 at 4:25 PM
jianshu0928.bsky.social
Am I the only one noticing this paper? FM index for blastn can be 20 times faster but never used in blast+ package (still the indexed Megablast). academic.oup.com/nar/article/...
High speed BLASTN: an accelerated MegaBLAST search tool
Abstract. Sequence alignment is a long standing problem in bioinformatics. The Basic Local Alignment Search Tool (BLAST) is one of the most popular and fun
academic.oup.com
March 30, 2025 at 9:21 AM
jianshu0928.bsky.social
help needed for bioconda Rust package: RUST_BACKTRACE=1 cargo install --path . --root $PREFIX, I now have a Rust work space, normally I do cargo build - - all, but cargo install does not have the --all option. How can I install the workspace (several binaries).
March 29, 2025 at 6:04 AM
Reposted
openrxiv.bsky.social
openRxiv has arrived!

We’re thrilled to announce the launch of openRxiv as an independent, researcher-led nonprofit to oversee bioRxiv and medRxiv, the world’s leading preprint servers for life and health sciences.
openrxiv.org/introducing-...

#openRxiv #OpenScience #Preprints #bioRxiv #medRxiv
March 11, 2025 at 1:18 PM