Jeffrey Gorman
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jatcg.bsky.social
Jeffrey Gorman
@jatcg.bsky.social
DNA Chemist interested in photophysics | Postdoc BE MIT | PhD Physics Cambridge | MSci Chemistry Imperial | Tennis-er (when it finally stops snowing)
Gratz on the first paper!
June 5, 2025 at 4:24 PM
Thanks! Yeah, my old method of adding an overhang on cadnano to find it on oxDNA was painful xD It's remains a little hard for us to iterate between the (s)cadnano strand-routing map design to the 3D oxDNA with our off-lattice ATHENA wireframes. But, you've already makes my life waaaay easier
February 7, 2025 at 2:44 PM
oh that scadnano integration is great, thanks, I'd hadn't noticed it before
February 6, 2025 at 1:07 AM
Awesome! Do you guys have any tips on how you orientate yourselves when editing between cadnano and visualizing/relaxing in oxDNA? I often find it really hard to locate what I've changed in our highly symmetric structures on cadnano (might be more of a problem with our symmetric wireframes)
February 5, 2025 at 1:55 PM
Actually come to think of it, its gotta be the protein. That dye on it's own would be soooooo absorbing
January 21, 2025 at 12:20 AM
I think it's the protein. There's a big farm complex in Germnay that makes them at scale. Gonna doubt dye survives for that long on it's own.
January 21, 2025 at 12:18 AM
I think back in the UK we've substitution that blue dye for it bio-derived bilins in lots of sweets. But, its transition dipole's just not as fun :(
January 19, 2025 at 1:08 AM