Jake Lever
@jakelever.bsky.social
Lecturer at @uofgcompsci.bsky.social using machine learning to gather biomedical knowledge.
Time for #BioNLP! @javiersanzcruza.bsky.social kicks off the workshop with our work on accelerating crossencoders for biomedical entity linking #acl2025
August 1, 2025 at 7:14 AM
Time for #BioNLP! @javiersanzcruza.bsky.social kicks off the workshop with our work on accelerating crossencoders for biomedical entity linking #acl2025
And that's the end of the text mining track at #ISMBECCB2025. So much cool work going on in this area
July 24, 2025 at 3:04 PM
And that's the end of the text mining track at #ISMBECCB2025. So much cool work going on in this area
Caralyn Reisle (@creisle.bsky.social) shows how language models can be used to verify claims in a big cancer knowledge base. A huge effort to create a fantastic benchmark set #ISMBECCB2025
July 24, 2025 at 1:12 PM
Caralyn Reisle (@creisle.bsky.social) shows how language models can be used to verify claims in a big cancer knowledge base. A huge effort to create a fantastic benchmark set #ISMBECCB2025
Lynn Schriml ( @diseaseontology.bsky.social ) gives a great talk on the Disease Ontology's philosophy of building a sustainable resource so that others can be confident to build upon it. 20+ years of the DO! academic.oup.com/nar/article/...
July 23, 2025 at 10:47 AM
Lynn Schriml ( @diseaseontology.bsky.social ) gives a great talk on the Disease Ontology's philosophy of building a sustainable resource so that others can be confident to build upon it. 20+ years of the DO! academic.oup.com/nar/article/...
Some beautiful and physically impossible predicted molecules from some AI models. Brilliant problems with AI from Charlotte Deane's keynote. The ring within a ring is particularly good! #ISMBECCB2025
July 23, 2025 at 8:34 AM
Some beautiful and physically impossible predicted molecules from some AI models. Brilliant problems with AI from Charlotte Deane's keynote. The ring within a ring is particularly good! #ISMBECCB2025
Creating a reasonable baseline (without fancy ML) is so important! Sometimes our ML methods aren't actually that good. Great example from Charlotte Deane in her Day 4 keynote #ISMBECCB2025
July 23, 2025 at 8:20 AM
Creating a reasonable baseline (without fancy ML) is so important! Sometimes our ML methods aren't actually that good. Great example from Charlotte Deane in her Day 4 keynote #ISMBECCB2025
Dystopian discussions about dealing with censorship in ontologies with the NCI deprecating transgender terms in the NCIT. Damien Goutte-Gattat gave a necessary but scary BOSC/BOKR talk about managing ontologies across borders. evsexplore.semantics.cancer.gov/evsexplore/c... #ISMBECCB2025
July 22, 2025 at 2:47 PM
Dystopian discussions about dealing with censorship in ontologies with the NCI deprecating transgender terms in the NCIT. Damien Goutte-Gattat gave a necessary but scary BOSC/BOKR talk about managing ontologies across borders. evsexplore.semantics.cancer.gov/evsexplore/c... #ISMBECCB2025
Ontologists do so much more than add new terms and curate papers! So many things to do, especially refactoring! Great BOSC/BOKR keynote from @cmungall.bsky.social #ISMBECCB2025
July 22, 2025 at 10:38 AM
Ontologists do so much more than add new terms and curate papers! So many things to do, especially refactoring! Great BOSC/BOKR keynote from @cmungall.bsky.social #ISMBECCB2025
Are AI agents having virtual lab meetings the future? Day 3 kicks off with a keynote from @jameszou.bsky.social. #ISMBECCB2025
July 22, 2025 at 8:08 AM
Are AI agents having virtual lab meetings the future? Day 3 kicks off with a keynote from @jameszou.bsky.social. #ISMBECCB2025
Brilliant results from DNA language models including an influence score that can differentiate benign and pathogenic variants from ClinVar. Great MLCSB talk from Julian Gagneur (@gagneurlab.bsky.social) #ISMBECCB2025
July 21, 2025 at 11:00 AM
Brilliant results from DNA language models including an influence score that can differentiate benign and pathogenic variants from ClinVar. Great MLCSB talk from Julian Gagneur (@gagneurlab.bsky.social) #ISMBECCB2025
Funding bioinformatics resources is getting even harder. Should we be charging industry for access? If we do, it needs to be seamless. Great keynote from Amos Bairoch to kick off Day 2 of #ISMBECCB2025
July 21, 2025 at 8:32 AM
Funding bioinformatics resources is getting even harder. Should we be charging industry for access? If we do, it needs to be seamless. Great keynote from Amos Bairoch to kick off Day 2 of #ISMBECCB2025