ISB-CGC
@isb-cgc.bsky.social
ISB-CGC works to democratize access to multiomic cancer data for Cancer Research with Cloud Computing; including TCGA, Mitelman, and proteomic data.
New HTAN data is now available on ISB-CGC!
Explore the latest updates and check out our new Python notebook, which demonstrates how to merge metadata across modalities in HTAN using Google BigQuery.
#HTAN #BioData #BigQuery #ISBCGC
github.com/isb-cgc/Comm...
Explore the latest updates and check out our new Python notebook, which demonstrates how to merge metadata across modalities in HTAN using Google BigQuery.
#HTAN #BioData #BigQuery #ISBCGC
github.com/isb-cgc/Comm...
Community-Notebooks/HTAN/Python Notebooks/Cross_Modality_Metadata_Matching_in_HTAN_Datasets.ipynb at master · isb-cgc/Community-Notebooks
Contribute to isb-cgc/Community-Notebooks development by creating an account on GitHub.
github.com
July 9, 2025 at 4:33 PM
New HTAN data is now available on ISB-CGC!
Explore the latest updates and check out our new Python notebook, which demonstrates how to merge metadata across modalities in HTAN using Google BigQuery.
#HTAN #BioData #BigQuery #ISBCGC
github.com/isb-cgc/Comm...
Explore the latest updates and check out our new Python notebook, which demonstrates how to merge metadata across modalities in HTAN using Google BigQuery.
#HTAN #BioData #BigQuery #ISBCGC
github.com/isb-cgc/Comm...
Harness the power of Google BigQuery to perform data analysis of Cytogenetic Cases and Gene Fusions in the Mitelman Database: bit.ly/MitelmanBQinfo. Use our new notebooks to guide your way: bit.ly/MitelmanDBno...
March 27, 2025 at 7:55 PM
Harness the power of Google BigQuery to perform data analysis of Cytogenetic Cases and Gene Fusions in the Mitelman Database: bit.ly/MitelmanBQinfo. Use our new notebooks to guide your way: bit.ly/MitelmanDBno...
Mitelman Database new feature alert! Includes: Circos plot data visualizations to view copy number and gene fusion cohorts, also view morphology and topography distributions for your target gene fusion. See them at bit.ly/mitelmandb
#CancerResearch #genefusion #cytogenetic
#CancerResearch #genefusion #cytogenetic
Mitelman Database Chromosome Aberrations and Gene Fusions in Cancer
The information in the Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer relates cytogenetic changes and their genomic consequences, in particular gene fusions, to tumor character...
bit.ly
January 8, 2025 at 7:19 PM
Mitelman Database new feature alert! Includes: Circos plot data visualizations to view copy number and gene fusion cohorts, also view morphology and topography distributions for your target gene fusion. See them at bit.ly/mitelmandb
#CancerResearch #genefusion #cytogenetic
#CancerResearch #genefusion #cytogenetic
The pursuit of science is a marathon, not a sprint. With each passing year, we gain momentum. We look forward to another year of supporting cancer research. Happy New Year!
January 2, 2025 at 10:45 PM
The pursuit of science is a marathon, not a sprint. With each passing year, we gain momentum. We look forward to another year of supporting cancer research. Happy New Year!
We are here to help you kickstart your #CancerResearch in the #GoogleCloud. Contact ISB-CGC at feedback@isb-cgc.org for assistance with features, data, or anything else!
December 11, 2024 at 8:28 PM
We are here to help you kickstart your #CancerResearch in the #GoogleCloud. Contact ISB-CGC at feedback@isb-cgc.org for assistance with features, data, or anything else!
The Mitelman Database has a redesigned landing page! This includes a new count, unique cytogenetic aberrations, along with previous counts: cytogenetic cases, unique gene fusions, & genes involved. Check it out at bit.ly/mitelmandb
#CancerResearch #genefusion #cytogenetic
#CancerResearch #genefusion #cytogenetic
Mitelman Database Chromosome Aberrations and Gene Fusions in Cancer
The information in the Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer relates cytogenetic changes and their genomic consequences, in particular gene fusions, to tumor character...
bit.ly
December 4, 2024 at 4:55 PM
The Mitelman Database has a redesigned landing page! This includes a new count, unique cytogenetic aberrations, along with previous counts: cytogenetic cases, unique gene fusions, & genes involved. Check it out at bit.ly/mitelmandb
#CancerResearch #genefusion #cytogenetic
#CancerResearch #genefusion #cytogenetic
New #NCIHTAN notebook added to our Community Notebooks! Join us for a guide in utilizing the latest HTAN scATAC-seq data available in #BigQuery using Jupyter Notebooks. Find out more at bit.ly/HTAN_notebooks
#NCICancerBio #CancerMoonshot #CancerResearch
#NCICancerBio #CancerMoonshot #CancerResearch
HTAN Notebooks — ISB Cancer Gateway in the Cloud 2.0.0 documentation
bit.ly
November 20, 2024 at 4:50 PM
New #NCIHTAN notebook added to our Community Notebooks! Join us for a guide in utilizing the latest HTAN scATAC-seq data available in #BigQuery using Jupyter Notebooks. Find out more at bit.ly/HTAN_notebooks
#NCICancerBio #CancerMoonshot #CancerResearch
#NCICancerBio #CancerMoonshot #CancerResearch
Our Community Notebook Repository is a collection of tutorial and statistical analysis notebooks. These range from getting started to comparing the Mitelman DB to CytoConverter and #TCGA data. bit.ly/CommunityNot... #rstats #Python #JupyterNotebook
ISB-CGC Notebooks — ISB Cancer Gateway in the Cloud 2.0.0 documentation
http://bit.ly/CommunityNotebooks…
November 6, 2024 at 6:54 PM
Our Community Notebook Repository is a collection of tutorial and statistical analysis notebooks. These range from getting started to comparing the Mitelman DB to CytoConverter and #TCGA data. bit.ly/CommunityNot... #rstats #Python #JupyterNotebook
Interested in exploring the data available from ISB-CGC in #BigQuery? Use the BigQuery Table Search to find data from the Genomics Data Commons, Proteomics Data Commons, & more!
bit.ly/BQTableSearch
#NCIGDC #NCIProteomics
bit.ly/BQTableSearch
#NCIGDC #NCIProteomics
ISB-CGC BigQuery Table Search
Browse BigQuery tables of metadata and molecular cancer data from the Genomic Data Commons and other sources. Jump directly to a table to perform discovery and computation via SQL
bit.ly
October 31, 2024 at 5:08 PM
Interested in exploring the data available from ISB-CGC in #BigQuery? Use the BigQuery Table Search to find data from the Genomics Data Commons, Proteomics Data Commons, & more!
bit.ly/BQTableSearch
#NCIGDC #NCIProteomics
bit.ly/BQTableSearch
#NCIGDC #NCIProteomics
#HTAN release 6 data is now live in #BigQuery! Check out the new tables using our BigQuery Table Search tool at bit.ly/BQTableSearch and filter Program by HTAN
#CancerMoonshot
#CancerMoonshot
ISB-CGC BigQuery Table Search
Browse BigQuery tables of metadata and molecular cancer data from the Genomic Data Commons and other sources. Jump directly to a table to perform discovery and computation via SQL
bit.ly
October 23, 2024 at 5:54 PM
#HTAN release 6 data is now live in #BigQuery! Check out the new tables using our BigQuery Table Search tool at bit.ly/BQTableSearch and filter Program by HTAN
#CancerMoonshot
#CancerMoonshot
The quarterly release of the Mitelman Database is available! Check out the 78,294 cases and 34,096 gene fusions with 14,078 genes involved at bit.ly/mitelmandb
#CancerResearch #genefusion #cytogenetic
#CancerResearch #genefusion #cytogenetic
October 16, 2024 at 4:47 PM
The quarterly release of the Mitelman Database is available! Check out the 78,294 cases and 34,096 gene fusions with 14,078 genes involved at bit.ly/mitelmandb
#CancerResearch #genefusion #cytogenetic
#CancerResearch #genefusion #cytogenetic
Major updates to our Cohort Builder! Cases can now be filtered by all projects from GDC and PDC, and select projects from IDC. We now also enable exporting a cohort to #BigQuery with just a Google account, no Google project needed. Check it out at bit.ly/isbcgccohort
ISB-CGC
ISB-CGC Cancer Gateway in the Cloud
bit.ly
October 9, 2024 at 4:47 PM
Major updates to our Cohort Builder! Cases can now be filtered by all projects from GDC and PDC, and select projects from IDC. We now also enable exporting a cohort to #BigQuery with just a Google account, no Google project needed. Check it out at bit.ly/isbcgccohort
Our team is available to help you kickstart your #CancerResearch in the #GoogleCloud. Contact us at feedback@isb-cgc.org for assistance with features, data, or anything else! We also offer free Cloud credits to get your #CancerResearch project started. bit.ly/FreeCloudCre...
How to Request Cloud Credits — ISB Cancer Gateway in the Cloud 2.0.0 documentation
bit.ly
October 2, 2024 at 6:15 PM
Our team is available to help you kickstart your #CancerResearch in the #GoogleCloud. Contact us at feedback@isb-cgc.org for assistance with features, data, or anything else! We also offer free Cloud credits to get your #CancerResearch project started. bit.ly/FreeCloudCre...
@isbsci.bsky.social is hosting Resonance, a symposium celebrating the life of Professor Ilya Shmulevich, founding leader of ISB-CGC. This free hybrid event on Sat 10/5 is intended for researchers of all levels interested in Cancer Research, Digital Twins & more! isbscience.org/resonance/
Resonance: A symposium celebrating Professor Ilya Shmulevich’s life and contributions to science
Join us on Saturday, October 5, from 8:30 a.m. to 4:30 p.m. for a symposium celebrating the life and scientific contributions of Professor Ilya Shmulevich. The event will feature speakers whose resear...
isbscience.org
September 25, 2024 at 3:21 PM
@isbsci.bsky.social is hosting Resonance, a symposium celebrating the life of Professor Ilya Shmulevich, founding leader of ISB-CGC. This free hybrid event on Sat 10/5 is intended for researchers of all levels interested in Cancer Research, Digital Twins & more! isbscience.org/resonance/
Are you interested in quickly creating patient cohorts for #NCIGDC and #NCIPDC programs, such as #TCGA and #BEATAML? Try out the ISB-CGC Cohort Builder & Data Explorer! Create and compare cohorts with image viewers tools and file lists at bit.ly/isbcgccohort
September 11, 2024 at 5:11 PM
Are you interested in quickly creating patient cohorts for #NCIGDC and #NCIPDC programs, such as #TCGA and #BEATAML? Try out the ISB-CGC Cohort Builder & Data Explorer! Create and compare cohorts with image viewers tools and file lists at bit.ly/isbcgccohort
We have consolidated processed -omics data into tables by data type to create a #BigQuery Ecosystem for analyzing data from thousands of cancer patients across GDC and PDC programs such as TCGA, TARGET, and CPTAC. Find out more at bit.ly/Data_Overview
#CancerResearch
#CancerResearch
ISB-CGC Data Overview — ISB Cancer Gateway in the Cloud 2.0.0 documentation
bit.ly
September 4, 2024 at 5:05 PM
We have consolidated processed -omics data into tables by data type to create a #BigQuery Ecosystem for analyzing data from thousands of cancer patients across GDC and PDC programs such as TCGA, TARGET, and CPTAC. Find out more at bit.ly/Data_Overview
#CancerResearch
#CancerResearch
We aim to serve a broad range of cancer researchers, from those who prefer to use an interactive WebApp to access and explore rich genomic & proteomic datasets to those who want to write custom scripts using coding languages & APIs
#CancerResearch
#CancerResearch
August 21, 2024 at 5:01 PM
We aim to serve a broad range of cancer researchers, from those who prefer to use an interactive WebApp to access and explore rich genomic & proteomic datasets to those who want to write custom scripts using coding languages & APIs
#CancerResearch
#CancerResearch
Masked Somatic Mutation data from the GDC r40 are now available in #BigQuery! Check out the new tables with our BigQuery Table Search at bit.ly/BQTableSearc... by filtering data type by SOMATIC MUTATION. #CancerResearch
ISB-CGC BigQuery Table Search
Browse BigQuery tables of metadata and molecular cancer data from the Genomic Data Commons and other sources. Jump directly to a table to perform discovery and computation via SQL
http://bit.ly/BQTableSearch_Processed_omics…
August 14, 2024 at 4:02 PM
Masked Somatic Mutation data from the GDC r40 are now available in #BigQuery! Check out the new tables with our BigQuery Table Search at bit.ly/BQTableSearc... by filtering data type by SOMATIC MUTATION. #CancerResearch
Thank you #ISMB2024 for letting us share our collaboration with Dr. Acquaah-Mensah of MCPHS Boston where we used AI/ML and ISB-CGC to analyze radiomic data in Black and White breast cancer patients. We were excited by the enthusiasm for using Generative AI in #CancerResearch!
August 7, 2024 at 4:32 PM
Thank you #ISMB2024 for letting us share our collaboration with Dr. Acquaah-Mensah of MCPHS Boston where we used AI/ML and ISB-CGC to analyze radiomic data in Black and White breast cancer patients. We were excited by the enthusiasm for using Generative AI in #CancerResearch!
Check out new GDC r40 #RNAseq #BigQuery tables! Discover the new tables with our BigQuery table search at bit.ly/BQTableSearch by filtering data type by GENE EXPRESSION. #CancerResearch
ISB-CGC BigQuery Table Search
Browse BigQuery tables of metadata and molecular cancer data from the Genomic Data Commons and other sources. Jump directly to a table to perform discovery and computation via SQL
bit.ly
August 5, 2024 at 10:12 PM
Check out new GDC r40 #RNAseq #BigQuery tables! Discover the new tables with our BigQuery table search at bit.ly/BQTableSearch by filtering data type by GENE EXPRESSION. #CancerResearch
New Feature! BigQuery Table Search Tool Filters can now be saved and shared! Find out how to use this feature in our documentation at isb-cancer-genomics-cloud.readthedocs.io/en/latest/se...
#BigQuery #CancerResearch
#BigQuery #CancerResearch
ISB-CGC BigQuery Table Search — ISB Cancer Gateway in the Cloud 2.0.0 documentation
isb-cancer-genomics-cloud.readthedocs.io
July 24, 2024 at 3:41 PM
New Feature! BigQuery Table Search Tool Filters can now be saved and shared! Find out how to use this feature in our documentation at isb-cancer-genomics-cloud.readthedocs.io/en/latest/se...
#BigQuery #CancerResearch
#BigQuery #CancerResearch
The quarterly release of the Mitelman Database is available! Check out the 77,850 cases and 34,009 gene fusions with 14,065 genes involved at bit.ly/mitelmandb #CancerResearch #genefusion #cytogenetic
July 17, 2024 at 5:20 PM
The quarterly release of the Mitelman Database is available! Check out the 77,850 cases and 34,009 gene fusions with 14,065 genes involved at bit.ly/mitelmandb #CancerResearch #genefusion #cytogenetic
GDC release 39 file, case, and clinical data are now available in #BigQuery! Use our BigQuery Table Search Tool to explore the new data at bit.ly/BQTableSearch #CancerResearch #NCIGDC
July 10, 2024 at 4:00 PM
GDC release 39 file, case, and clinical data are now available in #BigQuery! Use our BigQuery Table Search Tool to explore the new data at bit.ly/BQTableSearch #CancerResearch #NCIGDC
Masked Somatic Mutation data from the GDC r39 are now available in #BigQuery! Check out the new table with our BigQuery Table Search at bit.ly/BQTableSearch_Processed_omics by filtering data type by SOMATIC MUTATION.
#CancerResearch #TCGA
#CancerResearch #TCGA
ISB-CGC BigQuery Table Search
Browse BigQuery tables of metadata and molecular cancer data from the Genomic Data Commons and other sources. Jump directly to a table to perform discovery and computation via SQL
bit.ly
July 3, 2024 at 4:19 PM
Masked Somatic Mutation data from the GDC r39 are now available in #BigQuery! Check out the new table with our BigQuery Table Search at bit.ly/BQTableSearch_Processed_omics by filtering data type by SOMATIC MUTATION.
#CancerResearch #TCGA
#CancerResearch #TCGA
A new NCI HTAN notebook demonstrates how to create a Cancer Data Services (CDS) data import manifest using Google #BigQuery. Check out this notebook and more at bit.ly/HTAN_notebooks
#CancerMoonshot #CancerResearch #HTAN
#CancerMoonshot #CancerResearch #HTAN
HTAN Notebooks — ISB Cancer Gateway in the Cloud 2.0.0 documentation
bit.ly
June 26, 2024 at 3:07 PM
A new NCI HTAN notebook demonstrates how to create a Cancer Data Services (CDS) data import manifest using Google #BigQuery. Check out this notebook and more at bit.ly/HTAN_notebooks
#CancerMoonshot #CancerResearch #HTAN
#CancerMoonshot #CancerResearch #HTAN