Nabil-Fareed Alikhan
@happykhan.mstdn.science.ap.brid.gy
Admin for @mstdn.science. #bioinformatician. Interested in #microbiology and #genomics.
[bridged from https://mstdn.science/@happykhan on the fediverse by https://fed.brid.gy/ ]
[bridged from https://mstdn.science/@happykhan on the fediverse by https://fed.brid.gy/ ]
Folks been asking for a searchable catalogue for microbinfie podcast. With a 147 episodes, and 78+ guests its getting hard to find episodes of your interest.
anyway, i wrote a catalogue
https://www.happykhan.com/microbinfie
see all our lovely guests at https://www.happykhan.com/microbinfie/guests
anyway, i wrote a catalogue
https://www.happykhan.com/microbinfie
see all our lovely guests at https://www.happykhan.com/microbinfie/guests
November 13, 2025 at 1:30 AM
Folks been asking for a searchable catalogue for microbinfie podcast. With a 147 episodes, and 78+ guests its getting hard to find episodes of your interest.
anyway, i wrote a catalogue
https://www.happykhan.com/microbinfie
see all our lovely guests at https://www.happykhan.com/microbinfie/guests
anyway, i wrote a catalogue
https://www.happykhan.com/microbinfie
see all our lovely guests at https://www.happykhan.com/microbinfie/guests
Come see my poster at IMMEM Poster 151.
🔬 QualiBact – provides robust, data-driven QC thresholds for 304 bacterial species, built from >2.4M assemblies (AllTheBacteria + RefSeq).
⚙️ SpecCheck – an open-source command-line tool that applies these standards […]
[Original post on mstdn.science]
🔬 QualiBact – provides robust, data-driven QC thresholds for 304 bacterial species, built from >2.4M assemblies (AllTheBacteria + RefSeq).
⚙️ SpecCheck – an open-source command-line tool that applies these standards […]
[Original post on mstdn.science]
September 19, 2025 at 8:15 AM
Come see my poster at IMMEM Poster 151.
🔬 QualiBact – provides robust, data-driven QC thresholds for 304 bacterial species, built from >2.4M assemblies (AllTheBacteria + RefSeq).
⚙️ SpecCheck – an open-source command-line tool that applies these standards […]
[Original post on mstdn.science]
🔬 QualiBact – provides robust, data-driven QC thresholds for 304 bacterial species, built from >2.4M assemblies (AllTheBacteria + RefSeq).
⚙️ SpecCheck – an open-source command-line tool that applies these standards […]
[Original post on mstdn.science]
If you're at IMMEM. please come by and see "my" poster on vaccines.watch
Otherwise please read the preprint.
https://www.biorxiv.org/content/10.1101/2025.06.13.659488v1
Otherwise please read the preprint.
https://www.biorxiv.org/content/10.1101/2025.06.13.659488v1
September 17, 2025 at 3:31 PM
If you're at IMMEM. please come by and see "my" poster on vaccines.watch
Otherwise please read the preprint.
https://www.biorxiv.org/content/10.1101/2025.06.13.659488v1
Otherwise please read the preprint.
https://www.biorxiv.org/content/10.1101/2025.06.13.659488v1
New thing to try is pinning posts!
August 20, 2025 at 1:09 PM
New thing to try is pinning posts!
It all begins for #abphm2025 with keynote from Johanna Hanefeld (RKI).
May 21, 2025 at 12:32 PM
It all begins for #abphm2025 with keynote from Johanna Hanefeld (RKI).
Huge disparity in genomic data: We support all efforts to increase the genomic surveillance of pathogens on a global scale as dynamics differ locally: what happens in one place does not translate to another and high-risk clones can emerge anywhere […]
[Original post on mstdn.science]
[Original post on mstdn.science]
April 22, 2025 at 8:13 AM
Huge disparity in genomic data: We support all efforts to increase the genomic surveillance of pathogens on a global scale as dynamics differ locally: what happens in one place does not translate to another and high-risk clones can emerge anywhere […]
[Original post on mstdn.science]
[Original post on mstdn.science]
Always-on: all QC’d genomes with geotemporal metadata, are ingested from archives, analysed in http://pathogen.watch and results visualised within http://amr.watch. Data are extracted and updated every 4h, with observed trends therefore only delayed by time to […]
[Original post on mstdn.science]
[Original post on mstdn.science]
April 22, 2025 at 8:13 AM
Always-on: all QC’d genomes with geotemporal metadata, are ingested from archives, analysed in http://pathogen.watch and results visualised within http://amr.watch. Data are extracted and updated every 4h, with observed trends therefore only delayed by time to […]
[Original post on mstdn.science]
[Original post on mstdn.science]
We show disparities between high- and low- income settings, indicate vast gaps in our knowledge globally and highlight the need for ongoing,structured surveillance combined with timely data deposition (including metadata) to support public health
April 22, 2025 at 8:13 AM
We show disparities between high- and low- income settings, indicate vast gaps in our knowledge globally and highlight the need for ongoing,structured surveillance combined with timely data deposition (including metadata) to support public health
My origin story?
April 4, 2025 at 10:57 AM
My origin story?
Come find me at #microbio25 if you would like a sticker !
April 1, 2025 at 8:54 AM
Come find me at #microbio25 if you would like a sticker !
#microbio25 come find me at my poster today A067.
April 1, 2025 at 8:40 AM
#microbio25 come find me at my poster today A067.
Spaces are limited so if youre sure you can make it, register!
https://www.bio.cam.ac.uk/11th-microbial-bioinformatics-hackathon
https://www.bio.cam.ac.uk/11th-microbial-bioinformatics-hackathon
February 4, 2025 at 3:06 PM
Spaces are limited so if youre sure you can make it, register!
https://www.bio.cam.ac.uk/11th-microbial-bioinformatics-hackathon
https://www.bio.cam.ac.uk/11th-microbial-bioinformatics-hackathon
The explore page is also neat.
January 22, 2025 at 11:04 AM
The explore page is also neat.
Enjoying the new who to follow feature. Helping with discovery
January 22, 2025 at 11:03 AM
Enjoying the new who to follow feature. Helping with discovery
Testing.
January 21, 2025 at 4:03 PM
Testing.
Educational. Lol.
December 8, 2024 at 10:54 AM
Educational. Lol.
