Guillaume Holley
@guillaumeolesan.bsky.social
Research Scientist working on pangenomes and long reads at deCODE Genetics. Opinions shared here do not reflect the views of deCODE.
"There is no peace amongst the stars, for in the grim of darkness of the far future, there is only war" - W40K
"There is no peace amongst the stars, for in the grim of darkness of the far future, there is only war" - W40K
There is also PAV from the Eichler lab and maintained by the Beck lab (github.com/EichlerLab/pav). Both dipcall and PAV are being used to call small variants and SVs from the T2T-Q100 HG002 asm in the latest GIAB HG002 benchmark set.
GitHub - EichlerLab/pav: Phased assembly variant caller
Phased assembly variant caller. Contribute to EichlerLab/pav development by creating an account on GitHub.
github.com
October 21, 2025 at 5:51 PM
There is also PAV from the Eichler lab and maintained by the Beck lab (github.com/EichlerLab/pav). Both dipcall and PAV are being used to call small variants and SVs from the T2T-Q100 HG002 asm in the latest GIAB HG002 benchmark set.