Judith Garcia-Gonzalez
@garciagj.bsky.social
Bioimage analyst in the making 🔬| Plant biologist 🌱 | Geneticist 🧬
VMCF @ Charles university | Imaging Facility @ Institute of Experimental Botany of the Czech Academy of Sciences
🇪🇸🇨🇿
VMCF @ Charles university | Imaging Facility @ Institute of Experimental Botany of the Czech Academy of Sciences
🇪🇸🇨🇿
Reposted by Judith Garcia-Gonzalez
Spotiflow allows training detection models that generalize across imaging conditions w/o manual parameter tuning. Since the preprint we added lots of things, fast inference for large volumes + many use cases. Check it out at github.com/weigertlab/spotiflow . We hope it will be useful for people!
GitHub - weigertlab/spotiflow: Accurate and efficient spot detection for microscopy data
Accurate and efficient spot detection for microscopy data - weigertlab/spotiflow
github.com
June 6, 2025 at 7:06 PM
Spotiflow allows training detection models that generalize across imaging conditions w/o manual parameter tuning. Since the preprint we added lots of things, fast inference for large volumes + many use cases. Check it out at github.com/weigertlab/spotiflow . We hope it will be useful for people!
Reposted by Judith Garcia-Gonzalez
My #BioimageTooloftheDay is the awesome 3Dscript that I use to make video of 3D/4D microscopy data www.nature.com/articles/s41...
The best thing is that ChatGTP (probably other LLM) synergies beautifully with 3Dscript, making it ever easier to use. Voice to 3D video animation 😁
The best thing is that ChatGTP (probably other LLM) synergies beautifully with 3Dscript, making it ever easier to use. Voice to 3D video animation 😁
3Dscript: animating 3D/4D microscopy data using a natural-language-based syntax - Nature Methods
Nature Methods - 3Dscript: animating 3D/4D microscopy data using a natural-language-based syntax
www.nature.com
November 16, 2024 at 8:42 AM
My #BioimageTooloftheDay is the awesome 3Dscript that I use to make video of 3D/4D microscopy data www.nature.com/articles/s41...
The best thing is that ChatGTP (probably other LLM) synergies beautifully with 3Dscript, making it ever easier to use. Voice to 3D video animation 😁
The best thing is that ChatGTP (probably other LLM) synergies beautifully with 3Dscript, making it ever easier to use. Voice to 3D video animation 😁