Emrah Simsek
esimsek.bsky.social
Emrah Simsek
@esimsek.bsky.social
Assistant Professor of (bio)Physics at University of Florida. Studying life and death of microbes. biophysics, qBio, systems biology.
8/8:
@lingchongyou.bsky.social
and I realized that, even though Klebsiella disappeared, it was indispensable for Pseudomonas to expand, serving as a hidden initiator. More in the paper for enthusiasts. Now, I continue this line of investigation in my own lab.
December 6, 2025 at 9:47 PM
7/8: The study started when I tried altering Pseudomonas branching patterns by mixing it with Klebsiella. Expansion stopped well before the dish boundary, and I wanted to know why. My local CFU checks revealed Klebsiella was rare or absent in the final community.
December 6, 2025 at 9:47 PM
6/8: Bacteria can kickstart spatial expansion under antibiotics and then vanish. Focusing only on dominant species captures the aftermath, potentially missing such hidden initiators.
December 6, 2025 at 9:47 PM
5/8: Key biophysical insights:
1️⃣ An outsized role of minority bacteria
2️⃣ Context is key – effect cannot be captured in well-mixed cultures.
3️⃣ Proximity flips competition into facilitation – movement occurs only within helper-created safe zones.
December 6, 2025 at 9:47 PM
4/8: First tested in a pairwise community (P. aeruginosa + Klebsiella) under cefotaxime. Then, using a sink-drain sample from a hospital room, we built SynkC, a synthetic community, showing the same phenomenon under carbenicillin.
December 6, 2025 at 9:47 PM
3/8: We call these helper bacteria “hidden initiators.” They enable expansion by locally degrading antibiotics, creating safe zones where P. aeruginosa can move.
December 6, 2025 at 9:47 PM
2/8: Unexpectedly, otherwise competing nonmotile bacteria can “rescue” P. aeruginosa if nearby. These helpers vanish quickly as P. aeruginosa outcompetes them.
December 6, 2025 at 9:47 PM
thanks for your kind words and for patiently reading it several times 😉
December 6, 2025 at 5:08 PM
thanks for posting this.
December 5, 2025 at 9:57 PM