Epiverse TRACE
@epiverse-trace.bsky.social
Global collab (https://www.javeriana.edu.co/, https://www.uniandes.edu.co/, @mrcunitgambia.bsky.social, @lshtm.bsky.social) developing a trustworthy data analysis ecosystem to get ahead of the next public health crisis.
📌 https://epiverse-trace.github.io/
📌 https://epiverse-trace.github.io/
🎉 New on CRAN: the {readepi} package!
We’re excited to announce the release of {readepi}, an R package that makes working with epidemiological data faster and easier.
We’re excited to announce the release of {readepi}, an R package that makes working with epidemiological data faster and easier.
October 9, 2025 at 10:52 AM
🎉 New on CRAN: the {readepi} package!
We’re excited to announce the release of {readepi}, an R package that makes working with epidemiological data faster and easier.
We’re excited to announce the release of {readepi}, an R package that makes working with epidemiological data faster and easier.
🎓 Epiverse has launched a fellowship + training program in Africa — and YOU can be part of it!
The Epiverse Epidemiological Data Science Training is a free, self-paced course tailored to the African public health context.
👉 Join here: groups.google.com/g/epiverse-t...
🧵(1/4)
The Epiverse Epidemiological Data Science Training is a free, self-paced course tailored to the African public health context.
👉 Join here: groups.google.com/g/epiverse-t...
🧵(1/4)
Epiverse Epidemiological Data Science Training for Africa - Google Groups
groups.google.com
September 12, 2025 at 9:43 AM
🎓 Epiverse has launched a fellowship + training program in Africa — and YOU can be part of it!
The Epiverse Epidemiological Data Science Training is a free, self-paced course tailored to the African public health context.
👉 Join here: groups.google.com/g/epiverse-t...
🧵(1/4)
The Epiverse Epidemiological Data Science Training is a free, self-paced course tailored to the African public health context.
👉 Join here: groups.google.com/g/epiverse-t...
🧵(1/4)
Reposted by Epiverse TRACE
#NewLaunchAlert!
Our @epiverse-trace.bsky.social project launched the #EpiTrainingKit #Africa, an online course designed for Africa’s cultural, linguistic & epidemiological contexts.
The course is now available in
English: tinyurl.com/w83aaxbh
French: tinyurl.com/yyawpj29
#PublicHealth
Our @epiverse-trace.bsky.social project launched the #EpiTrainingKit #Africa, an online course designed for Africa’s cultural, linguistic & epidemiological contexts.
The course is now available in
English: tinyurl.com/w83aaxbh
French: tinyurl.com/yyawpj29
#PublicHealth
September 2, 2025 at 11:58 AM
#NewLaunchAlert!
Our @epiverse-trace.bsky.social project launched the #EpiTrainingKit #Africa, an online course designed for Africa’s cultural, linguistic & epidemiological contexts.
The course is now available in
English: tinyurl.com/w83aaxbh
French: tinyurl.com/yyawpj29
#PublicHealth
Our @epiverse-trace.bsky.social project launched the #EpiTrainingKit #Africa, an online course designed for Africa’s cultural, linguistic & epidemiological contexts.
The course is now available in
English: tinyurl.com/w83aaxbh
French: tinyurl.com/yyawpj29
#PublicHealth
Reposted by Epiverse TRACE
As part of the @epiverse-trace.bsky.social project, @mrcunitgambia.bsky.social staff with @lshtm.bsky.social are facilitating a two-week training at MRC Uganda.
Participants are learning advanced outbreak analytics tools to strengthen real-time monitoring, analysis & response to health emergencies.
Participants are learning advanced outbreak analytics tools to strengthen real-time monitoring, analysis & response to health emergencies.
August 19, 2025 at 10:28 AM
As part of the @epiverse-trace.bsky.social project, @mrcunitgambia.bsky.social staff with @lshtm.bsky.social are facilitating a two-week training at MRC Uganda.
Participants are learning advanced outbreak analytics tools to strengthen real-time monitoring, analysis & response to health emergencies.
Participants are learning advanced outbreak analytics tools to strengthen real-time monitoring, analysis & response to health emergencies.
📢 Join us for our next TRACEing Epiverse webinar!
We’re showcasing EpiNow2, an open-source R package developed with support from the Epiverse TRACE initiative to power real-time outbreak analytics and decision-making.
🧵👇
We’re showcasing EpiNow2, an open-source R package developed with support from the Epiverse TRACE initiative to power real-time outbreak analytics and decision-making.
🧵👇
August 8, 2025 at 1:14 PM
📢 Join us for our next TRACEing Epiverse webinar!
We’re showcasing EpiNow2, an open-source R package developed with support from the Epiverse TRACE initiative to power real-time outbreak analytics and decision-making.
🧵👇
We’re showcasing EpiNow2, an open-source R package developed with support from the Epiverse TRACE initiative to power real-time outbreak analytics and decision-making.
🧵👇
🚨 New FREE self-paced course!
We are excited to launch the #EpiTrainingKit #Africa: Introduction to Infectious Disease Modelling for Public Health.
🎯 Tailored for the African context
🌍 With a gender perspective
🆓 Open-access and online
#EpiTKit #Epiverse #PublicHealth
We are excited to launch the #EpiTrainingKit #Africa: Introduction to Infectious Disease Modelling for Public Health.
🎯 Tailored for the African context
🌍 With a gender perspective
🆓 Open-access and online
#EpiTKit #Epiverse #PublicHealth
August 4, 2025 at 6:30 PM
🚨 New FREE self-paced course!
We are excited to launch the #EpiTrainingKit #Africa: Introduction to Infectious Disease Modelling for Public Health.
🎯 Tailored for the African context
🌍 With a gender perspective
🆓 Open-access and online
#EpiTKit #Epiverse #PublicHealth
We are excited to launch the #EpiTrainingKit #Africa: Introduction to Infectious Disease Modelling for Public Health.
🎯 Tailored for the African context
🌍 With a gender perspective
🆓 Open-access and online
#EpiTKit #Epiverse #PublicHealth
Reposted by Epiverse TRACE
Back from Kenya, where I had the privilege of co-leading an Outbreak Data Science workshop with @jamesazam.bsky.social at KEMRI-Wellcome Trust. I'm proud to see open, reproducible tools like #EpiverseTRACE @epiverse-trace.bsky.social making a difference.
July 11, 2025 at 2:01 PM
Back from Kenya, where I had the privilege of co-leading an Outbreak Data Science workshop with @jamesazam.bsky.social at KEMRI-Wellcome Trust. I'm proud to see open, reproducible tools like #EpiverseTRACE @epiverse-trace.bsky.social making a difference.
Living in #Uganda and looking to further your expertise in using data science tools to investigate and respond to disease outbreaks? Your opportunity is here!
Hands-on training in Outbreak Analytics & Modelling with R, from 11 – 22 Aug 2025 in Entebbe.
Apply here: forms.office.com/e/fvkyM1XCVG
Hands-on training in Outbreak Analytics & Modelling with R, from 11 – 22 Aug 2025 in Entebbe.
Apply here: forms.office.com/e/fvkyM1XCVG
June 11, 2025 at 3:29 PM
Living in #Uganda and looking to further your expertise in using data science tools to investigate and respond to disease outbreaks? Your opportunity is here!
Hands-on training in Outbreak Analytics & Modelling with R, from 11 – 22 Aug 2025 in Entebbe.
Apply here: forms.office.com/e/fvkyM1XCVG
Hands-on training in Outbreak Analytics & Modelling with R, from 11 – 22 Aug 2025 in Entebbe.
Apply here: forms.office.com/e/fvkyM1XCVG
🚨 Join us for our next TRACEing Epiverse hands-on webinar! 🚨
📅 Date: May 29, 2025
🕙 Time: 10:00 AM EST | 2:00 PM GMT | 4:00 PM CEST
📍 Location: Online (Zoom)
🔗 lnkd.in/e2rXwVRR
By: @jwlambert.bsky.social on {simulist}and Karim Mané www.linkedin.com/in/karim-man... on {cleanepi}
🔁!
📅 Date: May 29, 2025
🕙 Time: 10:00 AM EST | 2:00 PM GMT | 4:00 PM CEST
📍 Location: Online (Zoom)
🔗 lnkd.in/e2rXwVRR
By: @jwlambert.bsky.social on {simulist}and Karim Mané www.linkedin.com/in/karim-man... on {cleanepi}
🔁!
May 26, 2025 at 12:08 PM
🚨 Join us for our next TRACEing Epiverse hands-on webinar! 🚨
📅 Date: May 29, 2025
🕙 Time: 10:00 AM EST | 2:00 PM GMT | 4:00 PM CEST
📍 Location: Online (Zoom)
🔗 lnkd.in/e2rXwVRR
By: @jwlambert.bsky.social on {simulist}and Karim Mané www.linkedin.com/in/karim-man... on {cleanepi}
🔁!
📅 Date: May 29, 2025
🕙 Time: 10:00 AM EST | 2:00 PM GMT | 4:00 PM CEST
📍 Location: Online (Zoom)
🔗 lnkd.in/e2rXwVRR
By: @jwlambert.bsky.social on {simulist}and Karim Mané www.linkedin.com/in/karim-man... on {cleanepi}
🔁!
Reposted by Epiverse TRACE
Great work by @andreevallecam.bsky.social leading an @epiverse-trace.bsky.social training working at the School of Public Health in University of Chile last month: saludpublica.uchile.cl/noticias/227...
Investigador de la London School of Hygiene & Tropical Medicine lidera seminario y taller sobre análisis reproducible en la Escuela de Salud Pública - Escuela de Salud Pública
Invitado por el Grupo de Ciencia de Datos para la Salud Pública, el epidemiólogo Andree Valle Campos compartió herramientas y enfoques para fortalecer la calidad, apertu
saludpublica.uchile.cl
May 1, 2025 at 8:28 AM
Great work by @andreevallecam.bsky.social leading an @epiverse-trace.bsky.social training working at the School of Public Health in University of Chile last month: saludpublica.uchile.cl/noticias/227...
Reposted by Epiverse TRACE
2025 here we come!
iddconf.org
IDDconf will be September 2-4 2025 in Ambleside.
Ticket info coming soon.
iddconf.org
IDDconf will be September 2-4 2025 in Ambleside.
Ticket info coming soon.
IDDconf 2025
A Conference on Infectious Disease Dynamics. IDDconf is the second instalment of a new meeting series focussing on innovative research in infectious disease dynamics.
iddconf.org
April 9, 2025 at 2:23 PM
2025 here we come!
iddconf.org
IDDconf will be September 2-4 2025 in Ambleside.
Ticket info coming soon.
iddconf.org
IDDconf will be September 2-4 2025 in Ambleside.
Ticket info coming soon.
📦 R Package of the Week: {linelist}
Turn data frames into #linelist objects by:
✅ Tagging key epidemiological variables (so you're not tied to column names)
✅ Validation to ensure tagged variables are of the correct type
✅ Safeguard against accidental loss of tagged variables during wrangling
1/3
Turn data frames into #linelist objects by:
✅ Tagging key epidemiological variables (so you're not tied to column names)
✅ Validation to ensure tagged variables are of the correct type
✅ Safeguard against accidental loss of tagged variables during wrangling
1/3
April 8, 2025 at 2:54 PM
📦 R Package of the Week: {linelist}
Turn data frames into #linelist objects by:
✅ Tagging key epidemiological variables (so you're not tied to column names)
✅ Validation to ensure tagged variables are of the correct type
✅ Safeguard against accidental loss of tagged variables during wrangling
1/3
Turn data frames into #linelist objects by:
✅ Tagging key epidemiological variables (so you're not tied to column names)
✅ Validation to ensure tagged variables are of the correct type
✅ Safeguard against accidental loss of tagged variables during wrangling
1/3
Need realistic outbreak simulation data? Want to test out your theories, teach or practice your skills? Look no further!
{simulist} is an R package for simulating individual-level infectious disease outbreak data.
🧵 #simulist is our #EpiverseTRACE R Package of the Week! (1/4) #rstats
{simulist} is an R package for simulating individual-level infectious disease outbreak data.
🧵 #simulist is our #EpiverseTRACE R Package of the Week! (1/4) #rstats
April 1, 2025 at 12:56 PM
Need realistic outbreak simulation data? Want to test out your theories, teach or practice your skills? Look no further!
{simulist} is an R package for simulating individual-level infectious disease outbreak data.
🧵 #simulist is our #EpiverseTRACE R Package of the Week! (1/4) #rstats
{simulist} is an R package for simulating individual-level infectious disease outbreak data.
🧵 #simulist is our #EpiverseTRACE R Package of the Week! (1/4) #rstats
Reposted by Epiverse TRACE
Here's a summary of our training materials.
March 28, 2025 at 12:32 PM
Here's a summary of our training materials.
Building #PublicHealth data science capacity is key!
At #EpiverseTRACE, we combine open-source tools #rstats with hands-on #training to equip the next generation of public health professionals and data scientists with cutting-edge analytical skills.
We host Spanish and English #tutorials!
🧵(1/4)
At #EpiverseTRACE, we combine open-source tools #rstats with hands-on #training to equip the next generation of public health professionals and data scientists with cutting-edge analytical skills.
We host Spanish and English #tutorials!
🧵(1/4)
March 27, 2025 at 11:31 AM
Building #PublicHealth data science capacity is key!
At #EpiverseTRACE, we combine open-source tools #rstats with hands-on #training to equip the next generation of public health professionals and data scientists with cutting-edge analytical skills.
We host Spanish and English #tutorials!
🧵(1/4)
At #EpiverseTRACE, we combine open-source tools #rstats with hands-on #training to equip the next generation of public health professionals and data scientists with cutting-edge analytical skills.
We host Spanish and English #tutorials!
🧵(1/4)
Reposted by Epiverse TRACE
Must also credit Edwin van Leeuwen of @ukhsa.bsky.social for initially writing some of the internals of {finalsize}.
Some recent changes not on CRAN yet: rough estimates of the effect of social contacts NPIs with (optional) age-varying effect. See the dev website for more.
Some recent changes not on CRAN yet: rough estimates of the effect of social contacts NPIs with (optional) age-varying effect. See the dev website for more.
🔎 How can #finalsize help you?
✅ Calculate the final size of an epidemic given the R0;
✅ Estimate the epidemic size with differences/heterogeneities among demographic groups;
✅ Provide rough estimates of the effectiveness of pharmaceutical interventions.
#EpiverseTRACE #rstats
(2/5)
✅ Calculate the final size of an epidemic given the R0;
✅ Estimate the epidemic size with differences/heterogeneities among demographic groups;
✅ Provide rough estimates of the effectiveness of pharmaceutical interventions.
#EpiverseTRACE #rstats
(2/5)
March 25, 2025 at 12:02 PM
Must also credit Edwin van Leeuwen of @ukhsa.bsky.social for initially writing some of the internals of {finalsize}.
Some recent changes not on CRAN yet: rough estimates of the effect of social contacts NPIs with (optional) age-varying effect. See the dev website for more.
Some recent changes not on CRAN yet: rough estimates of the effect of social contacts NPIs with (optional) age-varying effect. See the dev website for more.
🚀 #rstats package of the week {finalsize}
Looking for an open-source solution to calculate the final size of a SIR epidemic?
#finalsize is part of the #EpiverseTRACE ecosystem, designed to support epidemiologists and public health professionals in tackling infectious disease challenges.
🧵 (1/5)
Looking for an open-source solution to calculate the final size of a SIR epidemic?
#finalsize is part of the #EpiverseTRACE ecosystem, designed to support epidemiologists and public health professionals in tackling infectious disease challenges.
🧵 (1/5)
March 25, 2025 at 11:25 AM
🚀 #rstats package of the week {finalsize}
Looking for an open-source solution to calculate the final size of a SIR epidemic?
#finalsize is part of the #EpiverseTRACE ecosystem, designed to support epidemiologists and public health professionals in tackling infectious disease challenges.
🧵 (1/5)
Looking for an open-source solution to calculate the final size of a SIR epidemic?
#finalsize is part of the #EpiverseTRACE ecosystem, designed to support epidemiologists and public health professionals in tackling infectious disease challenges.
🧵 (1/5)
Excited to share that #EpiverseTRACE is now part of the Digital Public Goods Alliance #DPGA ecosystem!
At Epiverse we believe open science and digital public goods are key to addressing global health challenges. Thanks, DPGA for recognizing our work! github.com/dpgalliance
🧵 report in thread (1/3)
At Epiverse we believe open science and digital public goods are key to addressing global health challenges. Thanks, DPGA for recognizing our work! github.com/dpgalliance
🧵 report in thread (1/3)
March 21, 2025 at 11:54 AM
Excited to share that #EpiverseTRACE is now part of the Digital Public Goods Alliance #DPGA ecosystem!
At Epiverse we believe open science and digital public goods are key to addressing global health challenges. Thanks, DPGA for recognizing our work! github.com/dpgalliance
🧵 report in thread (1/3)
At Epiverse we believe open science and digital public goods are key to addressing global health challenges. Thanks, DPGA for recognizing our work! github.com/dpgalliance
🧵 report in thread (1/3)
Join Epiverse at the Pandemic & Epidemic Intelligence Innovation Forum!
🗓️ 24 March
⏰ 13:00–14:30 CET
📍 Online
Adam Kucharski @adamjkucharski.bsky.social & Hugo Gruson github.com/Bisaloo will present on cross-community collaboration!
👉 Register: shorturl.at/1h6Cc
🗓️ 24 March
⏰ 13:00–14:30 CET
📍 Online
Adam Kucharski @adamjkucharski.bsky.social & Hugo Gruson github.com/Bisaloo will present on cross-community collaboration!
👉 Register: shorturl.at/1h6Cc
March 20, 2025 at 12:23 PM
Join Epiverse at the Pandemic & Epidemic Intelligence Innovation Forum!
🗓️ 24 March
⏰ 13:00–14:30 CET
📍 Online
Adam Kucharski @adamjkucharski.bsky.social & Hugo Gruson github.com/Bisaloo will present on cross-community collaboration!
👉 Register: shorturl.at/1h6Cc
🗓️ 24 March
⏰ 13:00–14:30 CET
📍 Online
Adam Kucharski @adamjkucharski.bsky.social & Hugo Gruson github.com/Bisaloo will present on cross-community collaboration!
👉 Register: shorturl.at/1h6Cc
🚀 Expanding the outbreak analytics ecosystem!
📦 New Epiverse tools join a growing suite of R packages boosting epidemic response worldwide.
👩💻 Check out our R project showing how to solve outbreak analytics tasks with Epiverse-TRACE, Epiforecasts, Reconverse, and R Epidemics Consortium packages.
⬇️
📦 New Epiverse tools join a growing suite of R packages boosting epidemic response worldwide.
👩💻 Check out our R project showing how to solve outbreak analytics tasks with Epiverse-TRACE, Epiforecasts, Reconverse, and R Epidemics Consortium packages.
⬇️
When an epidemic hits, how long does it take to get going with common epidemic analysis tasks?
A couple of weeks ago, we asked representatives from over a dozen UK organisations and universities who work actively on epidemic analysis and modelling how long the below tasks would take them....
1/
A couple of weeks ago, we asked representatives from over a dozen UK organisations and universities who work actively on epidemic analysis and modelling how long the below tasks would take them....
1/
March 18, 2025 at 5:00 PM
🚀 Expanding the outbreak analytics ecosystem!
📦 New Epiverse tools join a growing suite of R packages boosting epidemic response worldwide.
👩💻 Check out our R project showing how to solve outbreak analytics tasks with Epiverse-TRACE, Epiforecasts, Reconverse, and R Epidemics Consortium packages.
⬇️
📦 New Epiverse tools join a growing suite of R packages boosting epidemic response worldwide.
👩💻 Check out our R project showing how to solve outbreak analytics tasks with Epiverse-TRACE, Epiforecasts, Reconverse, and R Epidemics Consortium packages.
⬇️
#EpiverseTRACE is now on Bluesky & LinkedIn! 🎉
We’re expanding to be more inclusive & diverse, reaching a wider audience in public health & data science.
Want to know more about what we do?⁉️🤔
🧵a thread!
We’re expanding to be more inclusive & diverse, reaching a wider audience in public health & data science.
Want to know more about what we do?⁉️🤔
🧵a thread!
March 11, 2025 at 10:29 AM
#EpiverseTRACE is now on Bluesky & LinkedIn! 🎉
We’re expanding to be more inclusive & diverse, reaching a wider audience in public health & data science.
Want to know more about what we do?⁉️🤔
🧵a thread!
We’re expanding to be more inclusive & diverse, reaching a wider audience in public health & data science.
Want to know more about what we do?⁉️🤔
🧵a thread!