Emanuele Penocchio
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epenocchio.bsky.social
Emanuele Penocchio
@epenocchio.bsky.social
A chemist who adiabatically joined the dark side of physics -- they have nonequilibrium thermodynamics! Postdoc at Northwestern University.
Last but not least, we acknowledge that the TOC image was generated with the beta version of toddGPT, an advanced AI only available @nuchemistry.bsky.social 🤖
December 22, 2024 at 4:52 PM
Importantly, by showing that the Brownian information ratchet mechanism can explain power stroke engineering experiments, we informed a long-standing debate in which those experiments have been contrasted with the theory of kinetic asymmetry. Full story in the paper ;)
December 22, 2024 at 4:52 PM
Our work suggests that introducing power strokes in
chemically-driven synthetic molecular motors might affect their directional bias, thus providing a practical way to alter kinetic asymmetry in Brownian information ratchets that was previously overlooked.
December 22, 2024 at 4:52 PM
The change in the bias can align with what power stroke intuition would have suggested, offering a potential explanation for why the flawed power stroke mechanism can retain apparent utility when engineering directionality in specific systems.
December 22, 2024 at 4:52 PM
We found a resolution perfectly consistent with the Brownian ratchet mechanism: though power strokes are formally unimportant for determining directionality, we explicitly show that practical attempts to alter a power stroke have side effects that can change the directional bias.
December 22, 2024 at 4:52 PM
Here is a conundrum: chemical reaction network theory proved power strokes irrelevant for predicting molecular motor directionality. However, power strokes seem widespread in biology, and some have claimed they can tune biomotor directionality by changing power stroke magnitude 🤔
December 22, 2024 at 4:52 PM
They spoil the main results of our recent Chem paper, where we show how to deal with multiple cycles and spatial separation for driven chemical reaction networks.

Here is the full paper: www.sciencedirect.com/science/arti...

@giuliosflask.bsky.social @deanast.bsky.social
Analysis of kinetic asymmetry in a multi-cycle reaction network establishes the principles for autonomous compartmentalized molecular ratchets
Kinetic asymmetry is a key parameter describing non-equilibrium systems: it indicates the directionality of a reaction network under steady-state cond…
www.sciencedirect.com
November 27, 2024 at 5:27 PM