(Luis A) Eijy Nagai
@en-coding.bsky.social
Computational biologist/research associate at https://nakatolab.iqb.u-tokyo.ac.jp (UTokyo). Currently a visiting researcher at http://daisybio.de (TUM).
Network biology | Single cell | Transcriptomics | 3D genome | Epigenetics
Network biology | Single cell | Transcriptomics | 3D genome | Epigenetics
Reposted by (Luis A) Eijy Nagai
🚨The #NextflowSummit Call for Speakers and Posters is Now Open! 🚨
🎤 Present your talk or poster at the Virtual #NextflowSummit by @seqera.io (Oct 23–24).
📍Or showcase your poster in-person in Barcelona at the Nextflow Training and @nf-co.re Hackathon (Oct 28–29)
hubs.la/Q03xGPp_0
🎤 Present your talk or poster at the Virtual #NextflowSummit by @seqera.io (Oct 23–24).
📍Or showcase your poster in-person in Barcelona at the Nextflow Training and @nf-co.re Hackathon (Oct 28–29)
hubs.la/Q03xGPp_0
July 17, 2025 at 3:32 PM
🚨The #NextflowSummit Call for Speakers and Posters is Now Open! 🚨
🎤 Present your talk or poster at the Virtual #NextflowSummit by @seqera.io (Oct 23–24).
📍Or showcase your poster in-person in Barcelona at the Nextflow Training and @nf-co.re Hackathon (Oct 28–29)
hubs.la/Q03xGPp_0
🎤 Present your talk or poster at the Virtual #NextflowSummit by @seqera.io (Oct 23–24).
📍Or showcase your poster in-person in Barcelona at the Nextflow Training and @nf-co.re Hackathon (Oct 28–29)
hubs.la/Q03xGPp_0
Arrived in Liverpool for #ISMBECCB2025 🇬🇧
Excited for the event, keynote talks, and meaningful exchanges in computational biology. Looking forward to connecting with fellow researchers and learning from the amazing science ahead!
Excited for the event, keynote talks, and meaningful exchanges in computational biology. Looking forward to connecting with fellow researchers and learning from the amazing science ahead!
July 20, 2025 at 4:44 PM
Arrived in Liverpool for #ISMBECCB2025 🇬🇧
Excited for the event, keynote talks, and meaningful exchanges in computational biology. Looking forward to connecting with fellow researchers and learning from the amazing science ahead!
Excited for the event, keynote talks, and meaningful exchanges in computational biology. Looking forward to connecting with fellow researchers and learning from the amazing science ahead!
Happy that my sabbatical perfectly aligned with this biannual event! Presenting my research on community detection in signed networks using single-cell RNA-seq and exchanging ideas with scientists from Bavaria at WBS2025 was an amazing opportunity. Truly grateful @daisybio.de @itisalist.bsky.social!
Weihenstephan Bioinformatics Symposium 2025: More than 75 scientists from Bavaria and the world came together to share talks and create new synergies. It was great to host this event, for those who missed it: The next edition is planned for 2027 😉
April 8, 2025 at 9:28 AM
Happy that my sabbatical perfectly aligned with this biannual event! Presenting my research on community detection in signed networks using single-cell RNA-seq and exchanging ideas with scientists from Bavaria at WBS2025 was an amazing opportunity. Truly grateful @daisybio.de @itisalist.bsky.social!
Reposted by (Luis A) Eijy Nagai
Scholarships are available for the Galaxy and Bioconductor Community Conference on June 23-26 at CSHL through the JXTX Foundation. Apply today! jxtxfoundation.org/news/2025-2-...
JXTX + GBCC 2025 Scholarships
JXTX + GBCC 2025 Scholarships
jxtxfoundation.org
March 26, 2025 at 2:17 AM
Scholarships are available for the Galaxy and Bioconductor Community Conference on June 23-26 at CSHL through the JXTX Foundation. Apply today! jxtxfoundation.org/news/2025-2-...
Got this coolest badge upon attending the first day of @nf-co.re hackathon today! Very excited to learn and build in @nextflow.io! Thanks for the community and Nico Trummer for the great support!
March 24, 2025 at 7:23 PM
Got this coolest badge upon attending the first day of @nf-co.re hackathon today! Very excited to learn and build in @nextflow.io! Thanks for the community and Nico Trummer for the great support!
Reposted by (Luis A) Eijy Nagai
Greetings from Palermo! @en-coding.bsky.social, @a-dietrich.bsky.social, @itisalist.bsky.social, Serafina Reif, Nico Trummer & Kamila Kwiecien are united here at the occasion of the MyeInfoBank COSTAction: Converting Molecular Profiles of Myeloid Cells into Biomarkers for Inflammation and Cancer
March 20, 2025 at 1:56 PM
Greetings from Palermo! @en-coding.bsky.social, @a-dietrich.bsky.social, @itisalist.bsky.social, Serafina Reif, Nico Trummer & Kamila Kwiecien are united here at the occasion of the MyeInfoBank COSTAction: Converting Molecular Profiles of Myeloid Cells into Biomarkers for Inflammation and Cancer
Reposted by (Luis A) Eijy Nagai
Very excited to announce that the single cell/nuc. RNA/ATAC/multi-ome resource from ENCODE4 is now officially public. This includes raw data, processed data, annotations and pseudobulk products. Covers many human & mouse tissues. 1/
www.encodeproject.org/single-cell/...
www.encodeproject.org/single-cell/...
Single cell – ENCODEHomo sapiens clickable body map
www.encodeproject.org
January 7, 2025 at 9:29 PM
Very excited to announce that the single cell/nuc. RNA/ATAC/multi-ome resource from ENCODE4 is now officially public. This includes raw data, processed data, annotations and pseudobulk products. Covers many human & mouse tissues. 1/
www.encodeproject.org/single-cell/...
www.encodeproject.org/single-cell/...
Reposted by (Luis A) Eijy Nagai
Major milestone: Tabula Sapiens 2.0 maps tissue composition & TF expression in 175 cell types, identifying 745 ubiquitous & 890 cell type-specific TFs (many still uncharacterized -> #Codebook) w/ roles in tissue homeostasis, stress response & metabolism. #SingleCell www.biorxiv.org/content/10.1...
Tabula Sapiens reveals transcription factor expression, senescence effects, and sex-specific features in cell types from 28 human organs and tissues
The Tabula Sapiens is a reference human cell atlas containing single cell transcriptomic data from more than two dozen organs and tissues. Here we report Tabula Sapiens 2.0 which includes data from ni...
www.biorxiv.org
December 8, 2024 at 8:55 AM
Major milestone: Tabula Sapiens 2.0 maps tissue composition & TF expression in 175 cell types, identifying 745 ubiquitous & 890 cell type-specific TFs (many still uncharacterized -> #Codebook) w/ roles in tissue homeostasis, stress response & metabolism. #SingleCell www.biorxiv.org/content/10.1...