Ekin Deniz Aksu
@ekindea.bsky.social
Scientist and medical doctor. Biology AI/ML methods, gene regulation, DNA sequence models, single cells. Doing a PhD in computational biology at @molgen.mpg.de.
Today I was happy to present Corgi at the @broadinstitute.org Broad Institute at the ML in Drug Discovery Symposium.
If you want to use it for predicting genomic tracks, Corgi is now published on GitHub: github.com/ekinda/corgi
If you want to use it for predicting genomic tracks, Corgi is now published on GitHub: github.com/ekinda/corgi
November 7, 2025 at 11:36 PM
Today I was happy to present Corgi at the @broadinstitute.org Broad Institute at the ML in Drug Discovery Symposium.
If you want to use it for predicting genomic tracks, Corgi is now published on GitHub: github.com/ekinda/corgi
If you want to use it for predicting genomic tracks, Corgi is now published on GitHub: github.com/ekinda/corgi
It's conference week in Cambridge. Yesterday I presented Corgi in the MIT/MGB AI Cures conference, and today I'm at the Broad Institute for the Variant to Function conference.
September 23, 2025 at 3:00 PM
It's conference week in Cambridge. Yesterday I presented Corgi in the MIT/MGB AI Cures conference, and today I'm at the Broad Institute for the Variant to Function conference.
Looking forward to spending the next couple of months at MIT, collaborating with @bergerlab.bsky.social on deep learning methods in computational biology!
August 21, 2025 at 2:59 PM
Looking forward to spending the next couple of months at MIT, collaborating with @bergerlab.bsky.social on deep learning methods in computational biology!
I will present my recent work Corgi, a context-aware sequence-to-activity model, at the IMSB/ECCB 2025 next week at the RegSys track.
Send me a message if you want to meet!
#ISMBECCB2025
Send me a message if you want to meet!
#ISMBECCB2025
July 19, 2025 at 9:35 AM
I will present my recent work Corgi, a context-aware sequence-to-activity model, at the IMSB/ECCB 2025 next week at the RegSys track.
Send me a message if you want to meet!
#ISMBECCB2025
Send me a message if you want to meet!
#ISMBECCB2025
New preprint alert!
Corgi imitates cellular gene regulation and integrates DNA sequence and trans-regulator information.
This allows Corgi to make accurate predictions in unseen cell types. Also, it can simulate trans-regulator perturbations in silico.
Corgi imitates cellular gene regulation and integrates DNA sequence and trans-regulator information.
This allows Corgi to make accurate predictions in unseen cell types. Also, it can simulate trans-regulator perturbations in silico.
June 26, 2025 at 7:46 AM
New preprint alert!
Corgi imitates cellular gene regulation and integrates DNA sequence and trans-regulator information.
This allows Corgi to make accurate predictions in unseen cell types. Also, it can simulate trans-regulator perturbations in silico.
Corgi imitates cellular gene regulation and integrates DNA sequence and trans-regulator information.
This allows Corgi to make accurate predictions in unseen cell types. Also, it can simulate trans-regulator perturbations in silico.