Edmund Miller
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edmundmiller.dev
Edmund Miller
@edmundmiller.dev
1.4K followers 1.9K following 70 posts
PhD Candidate @ UT Dallas in the Functional Genomics Lab working on Nascent RNA identification
@nf-co.re
Bioinformatics Engineer @seqera.io

https://link.edmundmiller.dev/
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edmundmiller.dev
Went down a rabbit hole this weekend and wrote my first Python package that I published end to end!

It's just a package of a wonderful Jupyter notebook for making UpSet plots in Altair!

github.com/hms-dbmi/ups...
Upset plot of Shared Mutations of COVID Variants
January 20, 2025 at 4:46 PM
edmundmiller.dev
I also never thought of flatMap like this🤔 www.solshenker.com/assets/image...

training.nextflow.io/advanced/ope...
#nextflow
A graphic showing the flatMap Nextflow operator taking tuples on the left and reformatting them in a "flat" way on the right.
November 11, 2024 at 5:54 PM
edmundmiller.dev
Awesome blog post I stumbled on by @seqcmd.bsky.social while looking for a scatter-gather infographic! Bonus points for using #nextflow! www.solshenker.com/nextflow-sca...
www.solshenker.com/assets/image...
Scatter-gather diagram, illustrating the shorter wall time when using the method.
November 11, 2024 at 5:52 PM