Emanuel
@ebioman.bsky.social
Multi-omics advocate, working on cancer and CLD questions in industry, Rust programming, trail running, mountains and hip-hop
Heads up: This is an industry derived code and the license does not allow it's usage for profit
November 21, 2024 at 4:25 PM
Heads up: This is an industry derived code and the license does not allow it's usage for profit
Great threat and highlighting a few critical points which we reflected internally on as well, when we analyzed methylation in PacBio data www.biorxiv.org/content/10.1...
PAPET: a collection of performant algorithms to identify 5-methyl cytosine from PacBio SequelII data
CpGs methylation is an important feature for the regulation of gene expression in vertebreate genomes. In this paper, we present the PAcBio Predicting Epigenetics Toolkit (PAPET) algorithms. PAPET is ...
www.biorxiv.org
November 21, 2024 at 7:04 AM
Great threat and highlighting a few critical points which we reflected internally on as well, when we analyzed methylation in PacBio data www.biorxiv.org/content/10.1...
Do you know how it compares in general to interval trees ? Both in speed and "usability" e.g. compared with rust bio interval trees? docs.rs/bio/latest/b...
bio::data_structures::interval_tree - Rust
API documentation for the Rust `interval_tree` mod in crate `bio`.
docs.rs
November 20, 2024 at 5:29 PM
Do you know how it compares in general to interval trees ? Both in speed and "usability" e.g. compared with rust bio interval trees? docs.rs/bio/latest/b...
Damn too late. Did they mention if they make recordings available?
December 1, 2023 at 6:42 AM
Damn too late. Did they mention if they make recordings available?
Completely agree on that part 😉
October 25, 2023 at 5:13 PM
Completely agree on that part 😉
I think unit testing is really a must have. CI sometimes becomes more tricky in my experience when meaningful results can only be obtained with large and heavy data.
October 25, 2023 at 6:49 AM
I think unit testing is really a must have. CI sometimes becomes more tricky in my experience when meaningful results can only be obtained with large and heavy data.
Thx, I guess Nucleic Acid Research (methods), BMC or Plos Computational Biology might be good options. Any recommendations by chance?
September 21, 2023 at 12:36 PM
Thx, I guess Nucleic Acid Research (methods), BMC or Plos Computational Biology might be good options. Any recommendations by chance?