Kudos to the Xenium Explorer team at 10x Genomics for consistently upleveling what's possible out of the box for Xenium analysis!

Check out our analysis page to see all Xenium analysis improvements! bit.ly/4flCNSu

#spatialbiology #insitu #singlecellspatial #bioinformatics

Want to help build software that enables researchers to answer biology’s hardest and most elusive questions? Do so as Senior Product Manager, Cloud Visualization Software at
10x Genomics!

boards.greenhouse.io/10xgenomics/...

#singlecell #spatialbiology #hiring #productmanagement #TechJobs

And now you can try the automated cell annotation directly in Cell Ranger 9!

www.10xgenomics.com/support/soft...

#singlecell #bioinformatics #genomics

Super excited about this cell typing collab between 10x Genomics and the Broad. broad.io/CAS-News

Try it for free on cloud.10xgenomics.com/cloud-analysis and look out for more in the next Cell Ranger release coming imminently ;) (Let us know what you think!)

#singlecell #bioinformatics #genomics

Did you know that 10x Genomics publishes intros, tutorials, and blogs that help navigate the journey to publish #SingleCell, Visium #SpatialTranscriptomics and Xenium #singlecellspatial data? Check out the Analysis Guides!

www.10xgenomics.com/resources/an...

#Genomics #Bioinformatics

And check out how the redesigned Loupe user interface makes it simple to visualize the expression of your favorite genes!

The feature I’m most excited about: Finding target genes in your experiment just got easier with the new multi-sample differential expression in Loupe 7

Want to analyze Seurat data without code? Use the new 10x Genomics LoupeR package to move your data into the new Loupe 7. It sports a redesigned UI, and includes new features that put publication-ready figures just a few clicks away!

#genomics #singlecell

Finally, review the recommendations for optimal assay performance. Either accept the recommendations or iterate as needed. At the end of the workflow, your panel is ready to be ordered and manufactured. Check it out for yourself!
cloud.10xgenomics.com/xenium-panel...

Next, paste the list of genes you want to include. You can easily clean up the list to resolve any ambiguous gene names, etc. Then start building the design when you’re done.

Easily design 10x Genomics #singlecellspatial custom panels with the new #Xenium Panel Designer: Start with a pre-designed panel, or build a standalone custom panel (up to 480 plex). Design against curated references from CELLxGENE and GEO or bring your own references.

Use the per-gene localization gallery to fly through expression of each individual gene.

If you do H&E on the same section as your Xenium run, XE 1.2 also provides an intuitive workflow to align and overlay H&E in the Xenium coordinate space so you can see sub-cellular gene expression on top of your histopathological ground truth.

Check out the amazing preview dataset for the Xenium Mouse Tissue Atlassing Panel, showing expression of 379 genes in a an FFPE mouse pup (one day old, C57BL/6 strain)! Screenshot from Xenium Explorer 1.2.

www.10xgenomics.com/resources/da...

www.10xgenomics.com/support/soft...