Zikang (Dennis) Huang
dennishuang.bsky.social
Zikang (Dennis) Huang
@dennishuang.bsky.social
PhD student at Bugaj Lab UPenn | synbio | protein engineering | optogenetics | thermogenetics | systems bio | love weird dynamics, information flow, network structures of all systems | everything BcLOV4
Indeed, 1 A.A. mutation from each of these hotspots dramatically extended the pulsatory response (>18 hrs vs 10s of min), suggesting evolutionary tuning of dynamics.
April 15, 2025 at 2:46 PM
What about the temperature-sensitive inhibitory Node C? We mapped this to the mysterious “Domain of Unknown Function” (DUF). We still call it DUF even though function is now known :P.
April 15, 2025 at 2:46 PM
Step-to-pulse response – adaptation – is common in all kinds of networks, often through an incoherent feed-forward loop (IFFL). Node A quickly activates Node B but also —more slowly— Node C, which inhibits Node B. Result: a pulse of B. But how can a single protein do it w/o a larger network?
April 15, 2025 at 2:46 PM
Why does BcLOV4 turn itself off despite constant light stimulation, and why does this depend on temperature? The answer could make better optogenetic and thermogenetic tools, and itself was a fascinating puzzle.
April 15, 2025 at 2:46 PM
How can an individual protein show adaptation? The light- and temp-sensitive BcLOV4 gives a pulse of translocation during a step input of light. Answer in our preprint: *intra-molecular* feed-forward regulation. bit.ly/3Rg9veD
A @bugajlab.bsky.social collab with @nmrkaygee.bsky.social 🧵
April 15, 2025 at 2:46 PM