Davis McCarthy
@davisjmcc.bsky.social
Head, Bioinformatics and Cellular Genomics Lab,
St Vincent's Institute of Medical Research, Melbourne. Stats, AI/ML, bioinformatics, genomics, single-cell.
https://www.svi.edu.au/researchers/dr-davis-mccarthy/
St Vincent's Institute of Medical Research, Melbourne. Stats, AI/ML, bioinformatics, genomics, single-cell.
https://www.svi.edu.au/researchers/dr-davis-mccarthy/
i can only imagine the licensing agreement needed to get that name over the line
September 16, 2025 at 1:10 AM
i can only imagine the licensing agreement needed to get that name over the line
expertise, maybe...energy, ah that's a different issue...
September 10, 2025 at 12:41 AM
expertise, maybe...energy, ah that's a different issue...
Gosh the number of times I see people testing differentially expressed genes and then applying a post-hoc fold-change threshold and I have to scream into the void WE WROTE A METHOD TO TEST THE INTERVAL NULL (...15+ years ago 🫠)
July 23, 2025 at 4:51 AM
Gosh the number of times I see people testing differentially expressed genes and then applying a post-hoc fold-change threshold and I have to scream into the void WE WROTE A METHOD TO TEST THE INTERVAL NULL (...15+ years ago 🫠)
Increasingly, I think one of the most important questions people need to ask (and answer) themselves is "How much is enough?"
June 25, 2025 at 1:05 AM
Increasingly, I think one of the most important questions people need to ask (and answer) themselves is "How much is enough?"
I would also very much like a mixed model in edgeR 😉
afaik (given I haven't been an active developer for years), it hasn't been possible to implement a mixed model in a way that's compatible with the empirical Bayes information sharing...and for edgeR eBayes is more important if there's a tradeoff
afaik (given I haven't been an active developer for years), it hasn't been possible to implement a mixed model in a way that's compatible with the empirical Bayes information sharing...and for edgeR eBayes is more important if there's a tradeoff
June 20, 2025 at 12:11 AM
I would also very much like a mixed model in edgeR 😉
afaik (given I haven't been an active developer for years), it hasn't been possible to implement a mixed model in a way that's compatible with the empirical Bayes information sharing...and for edgeR eBayes is more important if there's a tradeoff
afaik (given I haven't been an active developer for years), it hasn't been possible to implement a mixed model in a way that's compatible with the empirical Bayes information sharing...and for edgeR eBayes is more important if there's a tradeoff
Yes, also open for PhD applicants too. We accept students who apply and are enrolled through the Faculty of Medicine, Dentistry and Health Sciences. Email me if you'd like to discuss further
June 18, 2025 at 1:25 AM
Yes, also open for PhD applicants too. We accept students who apply and are enrolled through the Faculty of Medicine, Dentistry and Health Sciences. Email me if you'd like to discuss further