Chris W Whelan
cwhelan.bsky.social
Chris W Whelan
@cwhelan.bsky.social
Genomics and bioinformatics. Computational Biologist at Broad Institute. Dad. Bostonian.
The current admissions system based on SES zones and bonus points excludes many kids with A grades and high test scores, especially those from Catholic schools like yours. If we are going to stick with that system then increasing the number of seats seems like the right thing to do to me.
May 14, 2025 at 4:57 PM
Reposted by Chris W Whelan
If this happens, this policy change will prevent discoveries and will result in our children and grandchildren being sicker and dying sooner
February 7, 2025 at 11:48 PM
Reposted by Chris W Whelan
ATTENTION

If you are someone who had an F31-Diversity (or similar) application submitted this cycle, please DM me here, contact me on signal (jeremymberg.78), or email me at jeremymberg@gmail.com.

I will keep all information confidential.

2/n
February 7, 2025 at 4:06 PM
If doing CNV calling the default bin size in GATK gCNV for Illumina data is 1kb. I’d look at the histogram and MAD of 1kb bin depths. If its not tight or your regions of interest contain lots of repetitive sequence 5 or 10kb might work (with less resolution)
January 4, 2025 at 2:44 PM
Not window size based, but we often use metrics like “Percent bases at 20X coverage” to QC WGS data for variant calling.
January 4, 2025 at 2:24 PM
I'm sort of skeptical that that's the case at selective schools, which in my experience liked well-rounded applicants, but maybe things have changed.
December 11, 2024 at 5:45 PM
Genuine question -- why not just push for rigorous college-prep level high school humanities classes then? I confess I do not get the appeal of Early College as currently presented. Seems like quasi-vocational "career-track" stuff instead of a chance to actually explore college-level classes early.
December 11, 2024 at 2:59 PM
What Wu policies are responsible for the low homicide rate?
December 11, 2024 at 2:49 PM
Lifelong JP resident. BPS grad and (unhappy) BPS parent.
November 19, 2024 at 2:06 PM