Are you implementing this in Julia? would be interesting to see how you create this bivariate legends, I attempted it a couple of months ago and gave up

If you need help setting up, send me a message and I can send you the scripts I have for AlphaFold

Have you tried modal? Depending on the size of your project, you can use the free tier to do some calculations. I am using it now as a poor PhD student and have predicted structures with ESM and AF, some PLMs, parallelize TMalign and more along those lines

Oh great! Wasn’t aware there was a difference, thanks for the clarification.

Awesome work! Just wanted to ask what is the main difference of this matrix with the substitution matrix the Foldseek team derived originally, which is used in Foldseek and Foldmason

The reddit community is pretty big and active, with new plugin announcements almost daily and weekly and monthly threads for commons things (config review, questions threads, memes, etc). I would recommend checking that out

How are you browsing arxiv from a terminal?

Macros are stored in the register you assign to it, therefore it should be pretty straightforward to capture this, name it and be able to call it whenever you want to use it again. stackoverflow.com/a/2024537

I could implement something small and let you know if you are interested