Cryptic Prophage (phage 🧬🪤 in 🦠)
@crypticprophage.bsky.social
TA systems stop phages (discovered '96), phages create persisters (discovered '23), E. c. CRISPR regulates cryptic prophages (discovered '21), indole = inter-kingdom signal, AI2 increases biofilm & TqsA exports (Thomas K. Wood, endowed prof, H113, 351 pub)
Congratulations to Joy for all of her hard work and to all the visitors to my lab including Daniel, Rodolfo, and Michael, who had an incredible impact and thanks to Maria!
Thanks also to the three reviewers that provided excellent insights to improve the paper.
Thanks also to the three reviewers that provided excellent insights to improve the paper.
October 16, 2025 at 8:43 PM
Congratulations to Joy for all of her hard work and to all the visitors to my lab including Daniel, Rodolfo, and Michael, who had an incredible impact and thanks to Maria!
Thanks also to the three reviewers that provided excellent insights to improve the paper.
Thanks also to the three reviewers that provided excellent insights to improve the paper.
Reposted by Cryptic Prophage (phage 🧬🪤 in 🦠)
Using DefenseFinder misses nearly all of the toxin/antitoxin systems; i.e., the most prevalent phage defense system is missing to a large degree from this database. I recommend running TAFinder or TADB. etc., too, to search for TAs, which likely are anti-phage systems.
September 23, 2025 at 4:07 PM
Using DefenseFinder misses nearly all of the toxin/antitoxin systems; i.e., the most prevalent phage defense system is missing to a large degree from this database. I recommend running TAFinder or TADB. etc., too, to search for TAs, which likely are anti-phage systems.
Using DefenseFinder misses nearly all of the toxin/antitoxin systems; i.e., the most prevalent phage defense system is missing to a large degree from this database. I recommend running TAFinder or TADB. etc., too, to search for TAs, which likely are anti-phage systems.
September 23, 2025 at 4:07 PM
Using DefenseFinder misses nearly all of the toxin/antitoxin systems; i.e., the most prevalent phage defense system is missing to a large degree from this database. I recommend running TAFinder or TADB. etc., too, to search for TAs, which likely are anti-phage systems.
Congratulations Ilana!
June 15, 2025 at 4:28 PM
Congratulations Ilana!
Cryptic Prophage (phage 🧬🪤 in 🦠)
(2/2) Not cited: doi:10.1111/1462-2920.14075 where it was shown the few live VBNCs = persisters. Also, there is no proof of differences in dormancy, i.e., no differences in persister cells (enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/...).
(2/2) Not cited: doi:10.1111/1462-2920.14075 where it was shown the few live VBNCs = persisters. Also, there is no proof of differences in dormancy, i.e., no differences in persister cells (enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/...).
Viable but non‐culturable and persistence describe the same bacterial stress state
Bacteria are often thought of as having two dormant phenotypes: the viable but non-culturable (VBNC) state and the persister state. Here we investigate the relatedness of the two stress-induced pheno...
enviromicro-journals.onlinelibrary.wiley.com
March 24, 2025 at 9:32 AM
Cryptic Prophage (phage 🧬🪤 in 🦠)
(2/2) Not cited: doi:10.1111/1462-2920.14075 where it was shown the few live VBNCs = persisters. Also, there is no proof of differences in dormancy, i.e., no differences in persister cells (enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/...).
(2/2) Not cited: doi:10.1111/1462-2920.14075 where it was shown the few live VBNCs = persisters. Also, there is no proof of differences in dormancy, i.e., no differences in persister cells (enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/...).
🧐Yes, indeed, there is a continuum of dormancy: Persisters revive based on ribosomes almost instantaneously with food and VBNCs never revive since they are dead, which is the ultimate dormant state...i.e., protein aggregation = death.
March 21, 2025 at 11:13 AM
🧐Yes, indeed, there is a continuum of dormancy: Persisters revive based on ribosomes almost instantaneously with food and VBNCs never revive since they are dead, which is the ultimate dormant state...i.e., protein aggregation = death.
I am sorry to hear that Vivek. I hope the pain diminishes.
January 10, 2025 at 10:51 AM
I am sorry to hear that Vivek. I hope the pain diminishes.