CompGenLabUB
@compgenlabub.bsky.social
ATG | Analyzing eukaryotic sequences and omics data since 2010, with a foot on viral metagenomics too | TGA
The pipeline stands out as a reproducible, user-friendly and adjustable automated protocol that allows user-friendly TES oriented analyses for virome study. Visit our GitHub page for more details: https://t.co/4bTXIhknAT 🧵6/6
November 25, 2024 at 8:28 AM
The pipeline stands out as a reproducible, user-friendly and adjustable automated protocol that allows user-friendly TES oriented analyses for virome study. Visit our GitHub page for more details: https://t.co/4bTXIhknAT 🧵6/6
The targeted viral species and similar sequences were notably enriched when compared to non targeted viral species. 🧵5/6 https://t.co/1BLxCCHI4e
November 25, 2024 at 8:28 AM
The targeted viral species and similar sequences were notably enriched when compared to non targeted viral species. 🧵5/6 https://t.co/1BLxCCHI4e
CAPTVRED got higher Precision, Recall & F-1 stats, compared to other automated pipelines, in synthetic datasets. It was used to assess performance of a capture panel too, resulting in an enrichment of the viral fraction & reduction of other fractions of non-interest.🧵4/6
November 25, 2024 at 8:28 AM
CAPTVRED got higher Precision, Recall & F-1 stats, compared to other automated pipelines, in synthetic datasets. It was used to assess performance of a capture panel too, resulting in an enrichment of the viral fraction & reduction of other fractions of non-interest.🧵4/6
This work presents a downstream bioinformatics analysis that complements and enhances the performance of this experimental approach. The pipeline includes a setup module that subsets and adapts the database together with the targeted viral species sequences. 🧵2/6
November 25, 2024 at 8:28 AM
This work presents a downstream bioinformatics analysis that complements and enhances the performance of this experimental approach. The pipeline includes a setup module that subsets and adapts the database together with the targeted viral species sequences. 🧵2/6
Happy to share our latest publication in viral metagenomics. https://t.co/vLcRYe9yeZ
CAPTVRED is an automated pipeline oriented to Viral Target Enrichment Sequencing. TES strategy is becoming increasingly popular for virome analyses, especially in environmental samples. 🧵1/6 https://t.co/nAwDGrGX2X
CAPTVRED is an automated pipeline oriented to Viral Target Enrichment Sequencing. TES strategy is becoming increasingly popular for virome analyses, especially in environmental samples. 🧵1/6 https://t.co/nAwDGrGX2X
November 25, 2024 at 8:28 AM
Happy to share our latest publication in viral metagenomics. https://t.co/vLcRYe9yeZ
CAPTVRED is an automated pipeline oriented to Viral Target Enrichment Sequencing. TES strategy is becoming increasingly popular for virome analyses, especially in environmental samples. 🧵1/6 https://t.co/nAwDGrGX2X
CAPTVRED is an automated pipeline oriented to Viral Target Enrichment Sequencing. TES strategy is becoming increasingly popular for virome analyses, especially in environmental samples. 🧵1/6 https://t.co/nAwDGrGX2X
#EMPB2024 Junior Scientist Comunication awards:
𝗕𝗲𝘀𝘁 𝗣𝗼𝘀𝘁𝗲𝗿 𝗣𝗿𝗲𝘀𝗲𝗻𝘁𝗮𝘁𝗶𝗼𝗻 (session B)
Poster B06
Leung, Casey
University of Toronto
"Reconstruction of positional information during homeostasis & regeneration from spatial transcriptomics of S. mediterranea".
𝗕𝗲𝘀𝘁 𝗣𝗼𝘀𝘁𝗲𝗿 𝗣𝗿𝗲𝘀𝗲𝗻𝘁𝗮𝘁𝗶𝗼𝗻 (session B)
Poster B06
Leung, Casey
University of Toronto
"Reconstruction of positional information during homeostasis & regeneration from spatial transcriptomics of S. mediterranea".
November 25, 2024 at 8:28 AM
#EMPB2024 Junior Scientist Comunication awards:
𝗕𝗲𝘀𝘁 𝗣𝗼𝘀𝘁𝗲𝗿 𝗣𝗿𝗲𝘀𝗲𝗻𝘁𝗮𝘁𝗶𝗼𝗻 (session B)
Poster B06
Leung, Casey
University of Toronto
"Reconstruction of positional information during homeostasis & regeneration from spatial transcriptomics of S. mediterranea".
𝗕𝗲𝘀𝘁 𝗣𝗼𝘀𝘁𝗲𝗿 𝗣𝗿𝗲𝘀𝗲𝗻𝘁𝗮𝘁𝗶𝗼𝗻 (session B)
Poster B06
Leung, Casey
University of Toronto
"Reconstruction of positional information during homeostasis & regeneration from spatial transcriptomics of S. mediterranea".
#EMPB2024 Junior Scientist Comunication awards:
𝗕𝗲𝘀𝘁 𝗣𝗼𝘀𝘁𝗲𝗿 𝗣𝗿𝗲𝘀𝗲𝗻𝘁𝗮𝘁𝗶𝗼𝗻 (session A)
Poster A04
Dreier, Fabienne
MPI-NAT
"In-situ Hybridization Chain Reaction (HCR) optimization in S. mediterranea – simplifying multi color FISH in planaria".
𝗕𝗲𝘀𝘁 𝗣𝗼𝘀𝘁𝗲𝗿 𝗣𝗿𝗲𝘀𝗲𝗻𝘁𝗮𝘁𝗶𝗼𝗻 (session A)
Poster A04
Dreier, Fabienne
MPI-NAT
"In-situ Hybridization Chain Reaction (HCR) optimization in S. mediterranea – simplifying multi color FISH in planaria".
November 25, 2024 at 8:28 AM
#EMPB2024 Junior Scientist Comunication awards:
𝗕𝗲𝘀𝘁 𝗣𝗼𝘀𝘁𝗲𝗿 𝗣𝗿𝗲𝘀𝗲𝗻𝘁𝗮𝘁𝗶𝗼𝗻 (session A)
Poster A04
Dreier, Fabienne
MPI-NAT
"In-situ Hybridization Chain Reaction (HCR) optimization in S. mediterranea – simplifying multi color FISH in planaria".
𝗕𝗲𝘀𝘁 𝗣𝗼𝘀𝘁𝗲𝗿 𝗣𝗿𝗲𝘀𝗲𝗻𝘁𝗮𝘁𝗶𝗼𝗻 (session A)
Poster A04
Dreier, Fabienne
MPI-NAT
"In-situ Hybridization Chain Reaction (HCR) optimization in S. mediterranea – simplifying multi color FISH in planaria".
#EMPB2024 Junior Scientist Comunication awards:
𝗕𝗲𝘀𝘁 𝗝𝘂𝗻𝗶𝗼𝗿 𝗦𝗰𝗶𝗲𝗻𝘁𝗶𝘀𝘁 𝗧𝗮𝗹𝗸
Gaurav Vaidya
EMBL-Heidelberg
"Let’s talk about sex: Mechanisms of reproductive switching in planarian flatworms".
𝗕𝗲𝘀𝘁 𝗝𝘂𝗻𝗶𝗼𝗿 𝗦𝗰𝗶𝗲𝗻𝘁𝗶𝘀𝘁 𝗧𝗮𝗹𝗸
Gaurav Vaidya
EMBL-Heidelberg
"Let’s talk about sex: Mechanisms of reproductive switching in planarian flatworms".
November 25, 2024 at 8:28 AM
#EMPB2024 Junior Scientist Comunication awards:
𝗕𝗲𝘀𝘁 𝗝𝘂𝗻𝗶𝗼𝗿 𝗦𝗰𝗶𝗲𝗻𝘁𝗶𝘀𝘁 𝗧𝗮𝗹𝗸
Gaurav Vaidya
EMBL-Heidelberg
"Let’s talk about sex: Mechanisms of reproductive switching in planarian flatworms".
𝗕𝗲𝘀𝘁 𝗝𝘂𝗻𝗶𝗼𝗿 𝗦𝗰𝗶𝗲𝗻𝘁𝗶𝘀𝘁 𝗧𝗮𝗹𝗸
Gaurav Vaidya
EMBL-Heidelberg
"Let’s talk about sex: Mechanisms of reproductive switching in planarian flatworms".
#EMPB2024 Junior Scientist Comunication awards:
𝗕𝗲𝘀𝘁 𝗝𝘂𝗻𝗶𝗼𝗿 𝗦𝗰𝗶𝗲𝗻𝘁𝗶𝘀𝘁 𝗧𝗮𝗹𝗸
Alberto Perez-Posada
University of Exeter
"The regulatory logic of Planarian stem cell differentiation".
𝗕𝗲𝘀𝘁 𝗝𝘂𝗻𝗶𝗼𝗿 𝗦𝗰𝗶𝗲𝗻𝘁𝗶𝘀𝘁 𝗧𝗮𝗹𝗸
Alberto Perez-Posada
University of Exeter
"The regulatory logic of Planarian stem cell differentiation".
November 25, 2024 at 8:28 AM
#EMPB2024 Junior Scientist Comunication awards:
𝗕𝗲𝘀𝘁 𝗝𝘂𝗻𝗶𝗼𝗿 𝗦𝗰𝗶𝗲𝗻𝘁𝗶𝘀𝘁 𝗧𝗮𝗹𝗸
Alberto Perez-Posada
University of Exeter
"The regulatory logic of Planarian stem cell differentiation".
𝗕𝗲𝘀𝘁 𝗝𝘂𝗻𝗶𝗼𝗿 𝗦𝗰𝗶𝗲𝗻𝘁𝗶𝘀𝘁 𝗧𝗮𝗹𝗸
Alberto Perez-Posada
University of Exeter
"The regulatory logic of Planarian stem cell differentiation".
Farewell to all #EMPB2024 participants, we are looking forward to meet you all on the next edition of the European Meeting on Planarian Biology!
November 25, 2024 at 8:28 AM
Farewell to all #EMPB2024 participants, we are looking forward to meet you all on the next edition of the European Meeting on Planarian Biology!
Announcing the #EMPB2024 winners of the best junior scientist talks and best poster presentations. https://t.co/Gl8saxnzmX
November 25, 2024 at 8:28 AM
Announcing the #EMPB2024 winners of the best junior scientist talks and best poster presentations. https://t.co/Gl8saxnzmX
Last #EMPB2024 session was a round table for an open discussion on new technologies that will be useful for the planarian community. https://t.co/QN4rhedGxL
November 25, 2024 at 8:28 AM
Last #EMPB2024 session was a round table for an open discussion on new technologies that will be useful for the planarian community. https://t.co/QN4rhedGxL
Invited online talk via Zoom by Oded Rechavi (Tel-Aviv University) at #EMPB2024. https://t.co/iPV2l5pW7F
November 25, 2024 at 8:28 AM
Invited online talk via Zoom by Oded Rechavi (Tel-Aviv University) at #EMPB2024. https://t.co/iPV2l5pW7F
Another interesting #EMPB2024 talks session on "Planarian Cell Biology", chaired by Prasad Abnave (NCCS-Savitribai Phule Pune University). https://t.co/ChdDkXFwNB
November 25, 2024 at 8:28 AM
Another interesting #EMPB2024 talks session on "Planarian Cell Biology", chaired by Prasad Abnave (NCCS-Savitribai Phule Pune University). https://t.co/ChdDkXFwNB
Enjoying the afternoon #EMPB2024 posters session! https://t.co/02hMKCfwrC
November 25, 2024 at 8:28 AM
Enjoying the afternoon #EMPB2024 posters session! https://t.co/02hMKCfwrC
Other flatworn species were welcome on the "Beyond Schmidtea mediterranea" #EMPB2024 talks session chaired by Claus Kuhn (University of Bayreuth). https://t.co/bDNtl08ZDX
November 25, 2024 at 8:28 AM
Other flatworn species were welcome on the "Beyond Schmidtea mediterranea" #EMPB2024 talks session chaired by Claus Kuhn (University of Bayreuth). https://t.co/bDNtl08ZDX
Talks retaking "Regeneration & Stem Cells" tòpic on the third session of #EMPB2024 chaired by Hanh Vu (EMBL-Heidelberg). https://t.co/8U0y6YiJGX
November 25, 2024 at 8:28 AM
Talks retaking "Regeneration & Stem Cells" tòpic on the third session of #EMPB2024 chaired by Hanh Vu (EMBL-Heidelberg). https://t.co/8U0y6YiJGX
People enjoying the morning #EMPB2024 posters session! https://t.co/gifHRBRT9D
November 25, 2024 at 8:28 AM
People enjoying the morning #EMPB2024 posters session! https://t.co/gifHRBRT9D
Starting session II "Immune & Toxin Responses", chaired by Karen Smeets (Hasselt University), at #EMPB2024 https://t.co/CinmtZPRQ6
November 25, 2024 at 8:28 AM
Starting session II "Immune & Toxin Responses", chaired by Karen Smeets (Hasselt University), at #EMPB2024 https://t.co/CinmtZPRQ6
Omri Wurtzel (Tel-Aviv University) chairing #EMPB2024 first talks session on "Stem Cells & Regeneration" https://t.co/Vl26cPhyW7
November 25, 2024 at 8:28 AM
Omri Wurtzel (Tel-Aviv University) chairing #EMPB2024 first talks session on "Stem Cells & Regeneration" https://t.co/Vl26cPhyW7
Bo Wang (Stanford University) invited talk opening the #EMPB2024 meeting https://t.co/jPmAVntXrz
November 25, 2024 at 8:28 AM
Bo Wang (Stanford University) invited talk opening the #EMPB2024 meeting https://t.co/jPmAVntXrz
Jochen Rink (MPI-NAT) opening remarks at #EMPB2024 https://t.co/YwvCONliM7
November 25, 2024 at 8:28 AM
Jochen Rink (MPI-NAT) opening remarks at #EMPB2024 https://t.co/YwvCONliM7
6th European Meeting on Planarian Biology #EMPB2024 is about to start. Welcome all participants! https://t.co/Pc5yqT0ss0
November 25, 2024 at 8:28 AM
6th European Meeting on Planarian Biology #EMPB2024 is about to start. Welcome all participants! https://t.co/Pc5yqT0ss0
#EMPB2024 Abstracts Book is already available from the meeting web page, here you can find a direct link to the PDF https://t.co/X4PKluoIzW https://t.co/W2pn1rtMJk
November 25, 2024 at 8:28 AM
#EMPB2024 Abstracts Book is already available from the meeting web page, here you can find a direct link to the PDF https://t.co/X4PKluoIzW https://t.co/W2pn1rtMJk
We are happy to announce that a preliminary program and venue information for #EMPB2024 is already available on the meeting website (https://t.co/FSbSzd8VF1) Further details about the talks coming soon!
November 25, 2024 at 8:28 AM
We are happy to announce that a preliminary program and venue information for #EMPB2024 is already available on the meeting website (https://t.co/FSbSzd8VF1) Further details about the talks coming soon!