Cihan Erkut
@cihanerkut.bsky.social
Computational Biologist | Integrative Genomics of Rare Cancers | Nanopore Sequencing | Division of Applied Functional Genomics | German Cancer Research Center (DKFZ) | National Center for Tumor Diseases (NCT) Heidelberg
It's probably possible. I would try. Some workflows such as nf-core/rnaseq may require TBs of space just for the intermediate files, which one can remove safely once the workflow succeeds. If they have limited storage, they can run the samples 1-by-1 and clean them up every time. Just an idea.
October 20, 2025 at 1:14 PM
It's probably possible. I would try. Some workflows such as nf-core/rnaseq may require TBs of space just for the intermediate files, which one can remove safely once the workflow succeeds. If they have limited storage, they can run the samples 1-by-1 and clean them up every time. Just an idea.
Depends on the processor, memory, storage and the pipeline. In theory possible but in practice may take a few days even it works. Do you have the reference FASTA and GTF only or the whole index (for STAR for example)?
October 20, 2025 at 11:08 AM
Depends on the processor, memory, storage and the pipeline. In theory possible but in practice may take a few days even it works. Do you have the reference FASTA and GTF only or the whole index (for STAR for example)?
Sounds very interesting to me 😂
May 28, 2025 at 12:45 PM
Sounds very interesting to me 😂