Chris Rinke
@chrisrinke.bsky.social
Professor of Microbiology @ University of Innsbruck, Austria
Honorary Associate Professor @ The University of Queensland, Australia
Environmental OMICS (E-OMICS) team lead
http://www.rinkelab.org
(former twitter/x account: @ChristianRinke )
Honorary Associate Professor @ The University of Queensland, Australia
Environmental OMICS (E-OMICS) team lead
http://www.rinkelab.org
(former twitter/x account: @ChristianRinke )
- Tangaroaeota phyl. nov. (former RBG-13-66-14)
- Ryujiniota phyl. nov. (former UBA6262) and
- Spongiamicota phyl. nov. (former UBA8248)
In summary, we contributed to the understanding of taxonomic and functional diversity in benthic prokaryotic communities across Western Pacific sediments.
- Ryujiniota phyl. nov. (former UBA6262) and
- Spongiamicota phyl. nov. (former UBA8248)
In summary, we contributed to the understanding of taxonomic and functional diversity in benthic prokaryotic communities across Western Pacific sediments.
April 27, 2025 at 12:24 PM
- Tangaroaeota phyl. nov. (former RBG-13-66-14)
- Ryujiniota phyl. nov. (former UBA6262) and
- Spongiamicota phyl. nov. (former UBA8248)
In summary, we contributed to the understanding of taxonomic and functional diversity in benthic prokaryotic communities across Western Pacific sediments.
- Ryujiniota phyl. nov. (former UBA6262) and
- Spongiamicota phyl. nov. (former UBA8248)
In summary, we contributed to the understanding of taxonomic and functional diversity in benthic prokaryotic communities across Western Pacific sediments.
... aerobic respiration and photosynthesis in the shallowest sediment layers to heterotrophic carbon utilization, sulphate reduction and methanogenesis in deeper anoxic sediments.
We recovered high-quality metagenome-assembled genomes for all main prokaryotic lineages & proposed names for 3 phyla:
We recovered high-quality metagenome-assembled genomes for all main prokaryotic lineages & proposed names for 3 phyla:
April 27, 2025 at 12:21 PM
... aerobic respiration and photosynthesis in the shallowest sediment layers to heterotrophic carbon utilization, sulphate reduction and methanogenesis in deeper anoxic sediments.
We recovered high-quality metagenome-assembled genomes for all main prokaryotic lineages & proposed names for 3 phyla:
We recovered high-quality metagenome-assembled genomes for all main prokaryotic lineages & proposed names for 3 phyla:
- metagenomics based taxonomy revealed clusters across all samples, that mainly aligned with depth & sediment type
- Thermoproteota & Asgardarchaeota were the most abundant archaeal phyla; Archaea relative abundances > 50% in some samples
- Metabolic capabilities ranged from ...
- Thermoproteota & Asgardarchaeota were the most abundant archaeal phyla; Archaea relative abundances > 50% in some samples
- Metabolic capabilities ranged from ...
April 27, 2025 at 12:19 PM
- metagenomics based taxonomy revealed clusters across all samples, that mainly aligned with depth & sediment type
- Thermoproteota & Asgardarchaeota were the most abundant archaeal phyla; Archaea relative abundances > 50% in some samples
- Metabolic capabilities ranged from ...
- Thermoproteota & Asgardarchaeota were the most abundant archaeal phyla; Archaea relative abundances > 50% in some samples
- Metabolic capabilities ranged from ...
... there is now (2025) a new rule 72 in the ICNP that says "if ... the proposed name is a synonym of a pro-validly published and pro-legitimate Candidatus name of the same rank, then that Candidatus name must be reused"
April 3, 2025 at 7:25 PM
... there is now (2025) a new rule 72 in the ICNP that says "if ... the proposed name is a synonym of a pro-validly published and pro-legitimate Candidatus name of the same rank, then that Candidatus name must be reused"
Yes, it will be interesting to see how this all plays out - SeqCode vs ICNP.
Using previously introduced names is beneficial indeed, and supports taxonomic stability. It seems that the ICSP has realised that as well ...
Using previously introduced names is beneficial indeed, and supports taxonomic stability. It seems that the ICSP has realised that as well ...
April 3, 2025 at 7:23 PM
Yes, it will be interesting to see how this all plays out - SeqCode vs ICNP.
Using previously introduced names is beneficial indeed, and supports taxonomic stability. It seems that the ICSP has realised that as well ...
Using previously introduced names is beneficial indeed, and supports taxonomic stability. It seems that the ICSP has realised that as well ...
Re Minisyncoccota paper #1: Besides the Code controversy, it is a good and longstanding practice to consider previous names, when proposing a new name for a lineage. Unfortunately, these authors did not consider this.
March 13, 2025 at 7:56 AM
Re Minisyncoccota paper #1: Besides the Code controversy, it is a good and longstanding practice to consider previous names, when proposing a new name for a lineage. Unfortunately, these authors did not consider this.
But, there is obviously a controversy brewing when it comes to authors publishing names under the ICNP that are in conflict with #SeqCode validated names. This is possible since the ICSP does not (yet) recognize SeqCode names. Hopefully that will change soon.
March 13, 2025 at 7:55 AM
But, there is obviously a controversy brewing when it comes to authors publishing names under the ICNP that are in conflict with #SeqCode validated names. This is possible since the ICSP does not (yet) recognize SeqCode names. Hopefully that will change soon.
Not so fast 😊 , #Patescibacteriota is a validly published phylum name under the #SeqCode and is here to stay ;-)
March 13, 2025 at 7:54 AM
Not so fast 😊 , #Patescibacteriota is a validly published phylum name under the #SeqCode and is here to stay ;-)
Btw based on phylogenetic diversity, #Patescibacteriota is the fourth-largest phylum in the bacterial domain 😀
February 8, 2025 at 4:59 PM
Btw based on phylogenetic diversity, #Patescibacteriota is the fourth-largest phylum in the bacterial domain 😀
The paper:
- covers nomenclatural types for higher ranks including the phylum Patescibacteriota
- includes genomic characterization, metabolic reconstruction, and biogeographical analysis of Patescibacterium
- explores the occurrence of long gene coding insertions in the 23S rRNA sequences
- covers nomenclatural types for higher ranks including the phylum Patescibacteriota
- includes genomic characterization, metabolic reconstruction, and biogeographical analysis of Patescibacterium
- explores the occurrence of long gene coding insertions in the 23S rRNA sequences
February 8, 2025 at 4:58 PM
The paper:
- covers nomenclatural types for higher ranks including the phylum Patescibacteriota
- includes genomic characterization, metabolic reconstruction, and biogeographical analysis of Patescibacterium
- explores the occurrence of long gene coding insertions in the 23S rRNA sequences
- covers nomenclatural types for higher ranks including the phylum Patescibacteriota
- includes genomic characterization, metabolic reconstruction, and biogeographical analysis of Patescibacterium
- explores the occurrence of long gene coding insertions in the 23S rRNA sequences
Hmm seems like bsky is not like Twitter/X once was, not much of a discussion here ... or nobody does amplicon sequencing any more 🤣😱🤔
February 8, 2025 at 4:46 PM
Hmm seems like bsky is not like Twitter/X once was, not much of a discussion here ... or nobody does amplicon sequencing any more 🤣😱🤔
Big congrats to aprabhu90.bsky.social - this is the 2nd paper from her PhD project! 👏
Apoorva Prabhu (@aprabhu90.bsky.social)
Postdoctoral Research Associate - Sydney Institute of Marine Science
Honorary Postdoc- University of Technology, Sydney
PhD at the Australian Centre for Ecogenomics, The University of Queensland, Bri...
aprabhu90.bsky.social
January 8, 2025 at 12:06 PM
Big congrats to aprabhu90.bsky.social - this is the 2nd paper from her PhD project! 👏
Have you tried it?
November 19, 2024 at 9:13 PM
Have you tried it?
Please add me as well:
scholar.google.com.au/citations?us...
scholar.google.com.au/citations?us...
Christian Rinke
Prof in Environmental Microbiology, University of Innsbruck, AUT & Honorary Associate Prof, UQ, AUS - Cited by 16,361 - microbial evolution & ecology - multi-omics - microbial plastic degra...
scholar.google.com.au
November 17, 2024 at 7:00 AM
Please add me as well:
scholar.google.com.au/citations?us...
scholar.google.com.au/citations?us...