Chiraag Kapadia
@chiraagkapadia.bsky.social
Physician-scientist in-training and hyphen-enthusiast interested in hematology, aging, and somatic mosaicism
Thank you Dr. Mullally!
March 6, 2025 at 9:14 PM
Thank you Dr. Mullally!
Thank you so much! 😊
March 6, 2025 at 9:13 PM
Thank you so much! 😊
Couldn't have done it without you! Thanks for all the advice over the years!
March 6, 2025 at 2:00 PM
Couldn't have done it without you! Thanks for all the advice over the years!
Thanks for reading! If you’re interested in chatting about aging, cancer, stem cell biology, or somatic mosaicism, drop me a line – my DMs are open! Link to PDF below! 17/end
rdcu.be/eci1V
rdcu.be/eci1V
Clonal dynamics and somatic evolution of haematopoiesis in mouse
Nature - Isolating and studying haematopoietic stem cells in young and aged mice demonstrates evolutionary processes related to blood production and provides a framework for interpreting future...
rdcu.be
March 6, 2025 at 1:58 PM
Thanks for reading! If you’re interested in chatting about aging, cancer, stem cell biology, or somatic mosaicism, drop me a line – my DMs are open! Link to PDF below! 17/end
rdcu.be/eci1V
rdcu.be/eci1V
And immense thanks to all collaborators that helped this story come together, esp. @jamie-blundell.bsky.social
@carolinewatson.bsky.social , @thekinglab.bsky.social , @mattyousefzadeh.bsky.social and others.
Thanks to our referees, and funding @NIH and @wellcometrust.bsky.social and others. 16/n
@carolinewatson.bsky.social , @thekinglab.bsky.social , @mattyousefzadeh.bsky.social and others.
Thanks to our referees, and funding @NIH and @wellcometrust.bsky.social and others. 16/n
March 6, 2025 at 1:58 PM
And immense thanks to all collaborators that helped this story come together, esp. @jamie-blundell.bsky.social
@carolinewatson.bsky.social , @thekinglab.bsky.social , @mattyousefzadeh.bsky.social and others.
Thanks to our referees, and funding @NIH and @wellcometrust.bsky.social and others. 16/n
@carolinewatson.bsky.social , @thekinglab.bsky.social , @mattyousefzadeh.bsky.social and others.
Thanks to our referees, and funding @NIH and @wellcometrust.bsky.social and others. 16/n
This was a fantastic collaboration between @goodell-lab.bsky.social and the Jyoti Nangalia group! Much gratitude to the teams at @bcmhouston.bsky.social and @sangerinstitute.bsky.social, esp. N Williams, and K Dawson! 15/n
March 6, 2025 at 1:58 PM
This was a fantastic collaboration between @goodell-lab.bsky.social and the Jyoti Nangalia group! Much gratitude to the teams at @bcmhouston.bsky.social and @sangerinstitute.bsky.social, esp. N Williams, and K Dawson! 15/n
Our findings deepen understanding of how evolutionary forces shape somatic mutation rates, stem cell behavior, and aging across mammals. This knowledge is crucial for accurately interpreting mouse model studies of blood disorders, stem cell biology, and age-related mosaicism. 14/n
March 6, 2025 at 1:58 PM
Our findings deepen understanding of how evolutionary forces shape somatic mutation rates, stem cell behavior, and aging across mammals. This knowledge is crucial for accurately interpreting mouse model studies of blood disorders, stem cell biology, and age-related mosaicism. 14/n
Remarkably, the mouse CH driver mutations confer about the same fitness advantages as in humans, suggesting conserved evolutionary pressures. Nevertheless, major clonal expansions remain rare in mice – the large stem cell pool and rapid turnover set a high drift threshold. 13/n
March 6, 2025 at 1:58 PM
Remarkably, the mouse CH driver mutations confer about the same fitness advantages as in humans, suggesting conserved evolutionary pressures. Nevertheless, major clonal expansions remain rare in mice – the large stem cell pool and rapid turnover set a high drift threshold. 13/n
Lab mice live in a highly protected environment, unlike humans. We found a variety of exposures stimulated clonal expansions. For instance, chemo-treated mice developed larger Trp53-mutant clones, paralleling what we see in human CH. 12/n
March 6, 2025 at 1:58 PM
Lab mice live in a highly protected environment, unlike humans. We found a variety of exposures stimulated clonal expansions. For instance, chemo-treated mice developed larger Trp53-mutant clones, paralleling what we see in human CH. 12/n
While rare, these clones exhibited clear signs of positive selection; the proportion of nonsynonymous to synonymous mutations was elevated – but each clone’s growth is constrained. 11/n
March 6, 2025 at 1:58 PM
While rare, these clones exhibited clear signs of positive selection; the proportion of nonsynonymous to synonymous mutations was elevated – but each clone’s growth is constrained. 11/n
To probe this further, we ultra-deep sequenced 24 key blood cell genes in young and old mice . This revealed clonal expansions driven by classic CH drivers like Dnmt3a, Tet2, and Bcor. The clones were very small (~0.02% of blood cells). 10/n
March 6, 2025 at 1:58 PM
To probe this further, we ultra-deep sequenced 24 key blood cell genes in young and old mice . This revealed clonal expansions driven by classic CH drivers like Dnmt3a, Tet2, and Bcor. The clones were very small (~0.02% of blood cells). 10/n
So *WHY* don’t we see clonal expansion in mice? Possibly because their short lifespan doesn’t allow enough time for a mutant clone to expand significantly, or because the fitness advantages are too modest to overcome genetic drift. 9/n
March 6, 2025 at 1:58 PM
So *WHY* don’t we see clonal expansion in mice? Possibly because their short lifespan doesn’t allow enough time for a mutant clone to expand significantly, or because the fitness advantages are too modest to overcome genetic drift. 9/n
Unlike older humans where massive clones can overtake blood production, mice maintained a diverse stem cell pool, with thousands of clones actively contributing to blood production and minimal loss of stem cell diversity. 8/n
March 6, 2025 at 1:58 PM
Unlike older humans where massive clones can overtake blood production, mice maintained a diverse stem cell pool, with thousands of clones actively contributing to blood production and minimal loss of stem cell diversity. 8/n
The pattern of branchpoints (i.e. cell divisions) indicates that the murine HSC/MPP pool continuously grows throughout aging, expanding to ~70,000 cells with age. Each HSC divides every ~6 weeks, with one cell leaving the pool every ~18 weeks. 7/n
March 6, 2025 at 1:58 PM
The pattern of branchpoints (i.e. cell divisions) indicates that the murine HSC/MPP pool continuously grows throughout aging, expanding to ~70,000 cells with age. Each HSC divides every ~6 weeks, with one cell leaving the pool every ~18 weeks. 7/n
We constructed phylogenetic “family trees” of the single cells based on their relatedness determined by shared mutations. The striking “banding” pattern of blue and red indicates HSCs and MPPs are largely separate pools that work in parallel to regenerate blood. 6/n
March 6, 2025 at 1:58 PM
We constructed phylogenetic “family trees” of the single cells based on their relatedness determined by shared mutations. The striking “banding” pattern of blue and red indicates HSCs and MPPs are largely separate pools that work in parallel to regenerate blood. 6/n
First big result: mutation rates. Mouse HSCs accumulate ~45 mutations per year – by end of life an average HSC harbors ~160 mutations. This rate is only ~3× higher than in humans, despite their ~30x difference in lifespan! 5/n
March 6, 2025 at 1:58 PM
First big result: mutation rates. Mouse HSCs accumulate ~45 mutations per year – by end of life an average HSC harbors ~160 mutations. This rate is only ~3× higher than in humans, despite their ~30x difference in lifespan! 5/n
We isolated hematopoietic stem cells (HSCs) and multipotent progenitors (MPPs) from young and old mice and performed WGS on over 1800 colonies grown from single cells, mapping around 222,000 total mutations. 4/n
March 6, 2025 at 1:58 PM
We isolated hematopoietic stem cells (HSCs) and multipotent progenitors (MPPs) from young and old mice and performed WGS on over 1800 colonies grown from single cells, mapping around 222,000 total mutations. 4/n
How conserved are these aging processes across species, especially in short-lived mammals like mice? We studied blood stem cell evolution in mice across their lifespan, coupling colony whole genome sequencing (WGS) and targeted duplex-corrected sequencing. 3/n
March 6, 2025 at 1:58 PM
How conserved are these aging processes across species, especially in short-lived mammals like mice? We studied blood stem cell evolution in mice across their lifespan, coupling colony whole genome sequencing (WGS) and targeted duplex-corrected sequencing. 3/n
As we age, our stem cells accumulate DNA mutations. Some mutations give growth advantage leading to greater cellular expansion – a process called clonal hematopoiesis (CH) in the blood. Such somatic mosaicism happens in all organs – we become mosaic patchworks with age! 2/n
March 6, 2025 at 1:58 PM
As we age, our stem cells accumulate DNA mutations. Some mutations give growth advantage leading to greater cellular expansion – a process called clonal hematopoiesis (CH) in the blood. Such somatic mosaicism happens in all organs – we become mosaic patchworks with age! 2/n