Angel De la Cruz
@caztle1304.bsky.social
🏳️🌈 | BSc Genomic Sciences 🧬 | Bioinformatics 💻 |
Reposted by Angel De la Cruz
🚀 Interested in multimodal analysis with WNN in Seurat?
Check out my recent RStatClub presentation, where we dive into Jaccard, canonical gene expression, and Silhouette for clustering evaluation!
📺 Watch here: speakerdeck.com/cyntsc/clust...
📑 Slides: www.youtube.com/watch?v=mE77...
#RStats
Check out my recent RStatClub presentation, where we dive into Jaccard, canonical gene expression, and Silhouette for clustering evaluation!
📺 Watch here: speakerdeck.com/cyntsc/clust...
📑 Slides: www.youtube.com/watch?v=mE77...
#RStats
Clustering methods in multiome scRNA-seq and scATAC-seq
Main topics covered on this talk:
Introducing the Weighted-Nearest Neighbor (WNN) for multimodal analysis
A glance of WNN clustering algorithms availa…
speakerdeck.com
February 13, 2025 at 5:40 PM
🚀 Interested in multimodal analysis with WNN in Seurat?
Check out my recent RStatClub presentation, where we dive into Jaccard, canonical gene expression, and Silhouette for clustering evaluation!
📺 Watch here: speakerdeck.com/cyntsc/clust...
📑 Slides: www.youtube.com/watch?v=mE77...
#RStats
Check out my recent RStatClub presentation, where we dive into Jaccard, canonical gene expression, and Silhouette for clustering evaluation!
📺 Watch here: speakerdeck.com/cyntsc/clust...
📑 Slides: www.youtube.com/watch?v=mE77...
#RStats
Reposted by Angel De la Cruz
curatedTCGAData is an R package available on Bioconductor that provides publicly available data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment objects.
You can find more information at: bioconductor.org/packages/release/data/experiment/html/curatedTCGAData.html.
You can find more information at: bioconductor.org/packages/release/data/experiment/html/curatedTCGAData.html.
curatedTCGAData
This package provides publicly available data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment objects. MultiAssayExperiment integrates multiple assays (e.g., RNA-seq, copy number, mutation...
bioconductor.org
February 4, 2025 at 7:31 PM
curatedTCGAData is an R package available on Bioconductor that provides publicly available data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment objects.
You can find more information at: bioconductor.org/packages/release/data/experiment/html/curatedTCGAData.html.
You can find more information at: bioconductor.org/packages/release/data/experiment/html/curatedTCGAData.html.
Reposted by Angel De la Cruz
video tutorial here www.youtube.com/watch?v=4m4n...
February 3, 2025 at 6:26 AM
video tutorial here www.youtube.com/watch?v=4m4n...
Reposted by Angel De la Cruz
I explored scDotPlot from @bioconductor.bsky.social, an amazing tool for generating dot plots with scRNA-seq data 📊. It supports hierarchical clustering and works seamlessly with Seurat and SingleCellExperiment objects. 🧬
Details: bit.ly/3EhQO6Z
#scRNAseq #Bioinformatics #DataVisualization
Details: bit.ly/3EhQO6Z
#scRNAseq #Bioinformatics #DataVisualization
February 1, 2025 at 8:10 PM
I explored scDotPlot from @bioconductor.bsky.social, an amazing tool for generating dot plots with scRNA-seq data 📊. It supports hierarchical clustering and works seamlessly with Seurat and SingleCellExperiment objects. 🧬
Details: bit.ly/3EhQO6Z
#scRNAseq #Bioinformatics #DataVisualization
Details: bit.ly/3EhQO6Z
#scRNAseq #Bioinformatics #DataVisualization
Reposted by Angel De la Cruz
📢 ¡Atención estudiantes de licenciatura! ¿Vives en un país en desarrollo ("low- and middle-income country) como México o muchos otros en Latinoamérica?
¡El premio Sanger está abierto! 👩🏽🔬🦠🧪🧫
Participa para ganar una #estancia de #investigación con #beca completa:
www.sanger.ac.uk/about/the-sa...
¡El premio Sanger está abierto! 👩🏽🔬🦠🧪🧫
Participa para ganar una #estancia de #investigación con #beca completa:
www.sanger.ac.uk/about/the-sa...
The Sanger Prize Competition 2025
Sanger Prize competiton 2025 for undergraduates interested in genomics, who are from low- and middle-income countries
www.sanger.ac.uk
November 20, 2024 at 3:57 PM
📢 ¡Atención estudiantes de licenciatura! ¿Vives en un país en desarrollo ("low- and middle-income country) como México o muchos otros en Latinoamérica?
¡El premio Sanger está abierto! 👩🏽🔬🦠🧪🧫
Participa para ganar una #estancia de #investigación con #beca completa:
www.sanger.ac.uk/about/the-sa...
¡El premio Sanger está abierto! 👩🏽🔬🦠🧪🧫
Participa para ganar una #estancia de #investigación con #beca completa:
www.sanger.ac.uk/about/the-sa...